PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g42400.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 206aa MW: 22165.4 Da PI: 9.0889 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 44.6 | 4.6e-14 | 150 | 185 | 1 | 37 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkp 37 d+p+YVNaKQ+++I++RR++Rak+e+e++l k+rk LOC_Os12g42400.4 150 DAPIYVNAKQCSAIIRRRHARAKAERENRL-VKARKV 185 68****************************.888885 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 8.7E-4 | 148 | 199 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 14.28 | 149 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 7.4E-11 | 152 | 184 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MMSFNKSQEG FGQVAAVATL ASNGGGSLPW LLYGEPLGQG KPAMSPEGVV PRAQTPLDPP 60 QVPAMDRGVP EILNFSMVPG KGEKCSEHST TIALQSPFAE YNGCFELGLG QSVVPSNYPY 120 ADQHYGLLSP YGVRPTPSGR ILIPPNMPAD APIYVNAKQC SAIIRRRHAR AKAERENRLV 180 KARKVSLNFQ LSMDSFSFAI LYISL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22707 | 0.0 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983765 | 0.0 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g42400.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g42400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288032 | 0.0 | AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK073742 | 0.0 | AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618449.1 | 1e-133 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_015618450.1 | 1e-133 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A0E0RK43 | 1e-131 | A0A0E0RK43_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8BN18 | 1e-131 | B8BN18_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q2QM38 | 1e-131 | Q2QM38_ORYSJ; CCAAT-binding transcription factor subunit B family protein, expressed | ||||
STRING | ORUFI12G21270.1 | 1e-132 | (Oryza rufipogon) | ||||
STRING | OS12T0618600-01 | 1e-132 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.3 | 2e-11 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g42400.4 |