PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g42400.3 | ||||||||
Common Name | LOC4352811, Os12g0618600, OsHAP2F, OsJ_36895, OSNPB_120618600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NF-YA | ||||||||
Protein Properties | Length: 312aa MW: 33663.2 Da PI: 8.4791 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 96.8 | 2.4e-30 | 150 | 206 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d+p+YVNaKQ+++I++RR++Rak+e+e++l k+rkpylheSRh hA+rR+RgsgGrF LOC_Os12g42400.3 150 DAPIYVNAKQCSAIIRRRHARAKAERENRL-VKARKPYLHESRHLHAMRRARGSGGRF 206 68****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 4.5E-33 | 148 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 35.128 | 149 | 209 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-21 | 152 | 174 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.5E-26 | 152 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 1.7E-21 | 183 | 206 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MMSFNKSQEG FGQVAAVATL ASNGGGSLPW LLYGEPLGQG KPAMSPEGVV PRAQTPLDPP 60 QVPAMDRGVP EILNFSMVPG KGEKCSEHST TIALQSPFAE YNGCFELGLG QSVVPSNYPY 120 ADQHYGLLSP YGVRPTPSGR ILIPPNMPAD APIYVNAKQC SAIIRRRHAR AKAERENRLV 180 KARKPYLHES RHLHAMRRAR GSGGRFLNTK KETNGKTTGG GRKVMDIIIP PLCPAASPSS 240 EQCNPSSVSS LSGSEVSSIY EHEDMDHFHS FDHLRTHFFT PLPSLMDVEH GAGNPFKWTA 300 ASDGCCDLLK A* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 4e-16 | 150 | 214 | 2 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
4g91_A | 2e-16 | 150 | 207 | 2 | 60 | HAPB protein |
4g92_A | 2e-16 | 150 | 207 | 2 | 60 | HAPB protein |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.22707 | 0.0 | callus| flower| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983765 | 0.0 | ||||
Expression Atlas | Q2QM38 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g42400.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g42400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288032 | 0.0 | AB288032.1 Oryza sativa Japonica Group OsHAP2F mRNA for HAP2 subunit of HAP complex, complete cds. | |||
GenBank | AK073742 | 0.0 | AK073742.1 Oryza sativa Japonica Group cDNA clone:J033067G24, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618449.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
Refseq | XP_015618450.1 | 0.0 | nuclear transcription factor Y subunit A-10 | ||||
TrEMBL | A0A0E0RK43 | 0.0 | A0A0E0RK43_ORYRU; Uncharacterized protein | ||||
TrEMBL | B8BN18 | 0.0 | B8BN18_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q2QM38 | 0.0 | Q2QM38_ORYSJ; CCAAT-binding transcription factor subunit B family protein, expressed | ||||
STRING | ORUFI12G21270.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0618600-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06510.2 | 3e-26 | nuclear factor Y, subunit A10 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g42400.3 |
Entrez Gene | 4352811 |
Publications ? help Back to Top | |||
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