PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g42190.1
Common NameOs12g0616400, PCF8
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family TCP
Protein Properties Length: 298aa    MW: 30880.8 Da    PI: 8.8686
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g42190.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP109.45.4e-34431821112
               TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceaesssssas 83 
                       aag+kdrhsk+ T++g+RdRRvRls+++a+ f+d+qd+LG+d++sk+ieWL+++a +ai++l+++          ss+++  + +++++s+++
  LOC_Os12g42190.1  43 AAGGKDRHSKVVTSRGLRDRRVRLSVPTAIAFYDIQDRLGVDQPSKAIEWLIRAAAAAIDALPSLdcsfalpaaaSSPPP-PAADDAEVSTSE 134
                       6899***************************************************************9999877533333.223333333333 PP

               TCP  84 nsssg...................kaaksaakskksqksaasalnlak 112
                       +s+s+                    ++++++ sk+ q++++++l++ +
  LOC_Os12g42190.1 135 TSKSSvlslanapcdngggafaelLHCSNTNGSKPLQQQQQATLAYYA 182
                       333336777788888999999999555555533333333333333333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.8E-3245173IPR005333Transcription factor, TCP
PROSITE profilePS5136931.67846104IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007275Biological Processmulticellular organism development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEEVVVGGKE RKRPRGALVG VGGGGASAAT AAAWRTSRVA RAAAGGKDRH SKVVTSRGLR  60
DRRVRLSVPT AIAFYDIQDR LGVDQPSKAI EWLIRAAAAA IDALPSLDCS FALPAAASSP  120
PPPAADDAEV STSETSKSSV LSLANAPCDN GGGAFAELLH CSNTNGSKPL QQQQQATLAY  180
YAAAQSAHMA APMSFEVMAM PPHLAFSQEQ QQHATVAAFD RGTLQSNASL WPPPPQPPPS  240
QHPFLLQRFA AAPAEVAGLP FFLAGGVGGA AAAAPAATTN GGERRLQLWD FKEERKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2151105155Putative transcription factor PCF6
5zkt_B1e-2151105155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.198990.0callus| leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO216242660.0
Expression AtlasQ2QM59-
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269|PubMed:12000681}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g42190.1
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g42190
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0004570.0BX000457.2 Oryza sativa chromosome 12, . BAC OJ1388_B05 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025877606.10.0transcription factor PCF8
SwissprotQ2QM590.0PCF8_ORYSJ; Transcription factor PCF8
TrEMBLA0A0E0JCI90.0A0A0E0JCI9_ORYNI; Uncharacterized protein
STRINGONIVA12G17870.10.0(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115532638
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.24e-20TCP family protein
Publications ? help Back to Top
  1. Kosugi S,Ohashi Y
    DNA binding and dimerization specificity and potential targets for the TCP protein family.
    Plant J., 2002. 30(3): p. 337-48
    [PMID:12000681]
  2. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  3. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]