PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g41860.1 | ||||||||
Common Name | HOX33, LOC4352777, Os12g0612700, OsJ_36852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 856aa MW: 93110 Da PI: 6.3499 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.2 | 2.8e-18 | 30 | 87 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ LOC_Os12g41860.1 30 YVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 6789****************************************************97 PP | |||||||
2 | START | 170.8 | 8.9e-54 | 178 | 385 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++++ vi +g g+++ LOC_Os12g41860.1 178 IAEETLAEFMSKATGTAVEWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDIIHVIPTGngGTIE 269 68999*****************************************************.8888888888************************ PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l++++++a+++l++ Rdf+++Ry+ l++g++vi+++S+++ + p+ +++++Rae+lpSg+li+p+++g+s + +v+hvdl++++++++l LOC_Os12g41860.1 270 LIYMQTYAPTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFIRAEVLPSGYLIRPCEGGGSMIYIVDHVDLDAWSVPEVL 362 ************999****************************9999999******************************************* PP HHHHHHHHHHHHHHHHHHTXXXX CS START 182 rslvksglaegaktwvatlqrqc 204 r+l++s + ++k++ a+l++ + LOC_Os12g41860.1 363 RPLYESPKILAQKMTIAALRHIR 385 ******************99865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.305 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.3E-15 | 26 | 92 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.13E-16 | 29 | 89 | No hit | No description |
SuperFamily | SSF46689 | 1.84E-16 | 29 | 91 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 6.5E-16 | 30 | 87 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 31 | 87 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 8.32E-6 | 81 | 120 | No hit | No description |
PROSITE profile | PS50848 | 27.005 | 168 | 368 | IPR002913 | START domain |
CDD | cd08875 | 3.61E-68 | 172 | 388 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 4.4E-24 | 176 | 368 | IPR023393 | START-like domain |
SMART | SM00234 | 6.6E-45 | 177 | 387 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-38 | 178 | 388 | No hit | No description |
Pfam | PF01852 | 1.1E-51 | 178 | 385 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.4E-5 | 425 | 509 | No hit | No description |
SuperFamily | SSF55961 | 4.4E-5 | 539 | 612 | No hit | No description |
SuperFamily | SSF55961 | 4.4E-5 | 648 | 658 | No hit | No description |
Pfam | PF08670 | 8.4E-47 | 712 | 854 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence Send to blast |
MAAAAVGGRG ERLSSSSPTA AAPQVDAGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LNAMNKLLME ENDRLQKQVS 120 RLVYENGYMR TQLHNPSAAT TDTSCESVVT SGQHHQQQNP AVLHPQRDAN NPAGLLAIAE 180 ETLAEFMSKA TGTAVEWVQM VGMKPGPDSI GIIAVSHNCS GVAARACGLV SLEPTKVAEI 240 LKDRPSWYRD CRCVDIIHVI PTGNGGTIEL IYMQTYAPTT LAAPRDFWTL RYTSGLEDGS 300 LVICERSLTQ STGGPSGPNT PNFIRAEVLP SGYLIRPCEG GGSMIYIVDH VDLDAWSVPE 360 VLRPLYESPK ILAQKMTIAA LRHIRQIAHE SSGEIPYGAG RQPAVFRTFS QRLSRGFNDA 420 VSGFPDDGWS LLSSDGSEDI TISVNSSPNK LVGSHVSPNP LFSTVGGGIL CAKASMLLQN 480 VPPALLVRFL REHRSEWADP GVDAYSAASL RASPYAVPGL RTSGFMGSQV ILPLAHTLEH 540 EEFLEVIRLE GHGFSHDEVL LSRDMYLLQL CSGVDENATS ASAQLVFAPI DESFADDAPL 600 LPSGFRVIPL DTKMDGPSAT RTLDLASALE VGPGGASRAS VEASGTCNRS VLTIAFQFSY 660 ENHLRESVAA MARSYVRAVM ASVQRVAVAI APSRLGPQIG MKHPPASPEA LTLASWIGRS 720 YRAHTGADIR WSDTEDADSP LALLWKHSDA ILCCSLKPAP MFTFANNAGL DILETTLVNL 780 QDISLEMILD DEGRKALCSE FPKIMQQGFT YLPGGVCKSS MGRQASYEQA VAWKVLSDDD 840 APHCLAFMLV NWTFM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.32984 | 0.0 | callus| flower| panicle| root| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32987392 | 0.0 | ||||
Expression Atlas | Q2QM96 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g41860.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g41860 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK102183 | 0.0 | AK102183.1 Oryza sativa Japonica Group cDNA clone:J033086M14, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620816.1 | 0.0 | homeobox-leucine zipper protein HOX33 | ||||
Swissprot | A2ZMN9 | 0.0 | HOX33_ORYSI; Homeobox-leucine zipper protein HOX33 | ||||
Swissprot | Q2QM96 | 0.0 | HOX33_ORYSJ; Homeobox-leucine zipper protein HOX33 | ||||
TrEMBL | A0A0E0JCD2 | 0.0 | A0A0E0JCD2_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RJY1 | 0.0 | A0A0E0RJY1_ORYRU; Uncharacterized protein | ||||
STRING | OS12T0612700-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 | Representative plant | OGRP651 | 16 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g41860.1 |
Entrez Gene | 4352777 |
Publications ? help Back to Top | |||
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