PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41700.1
Common NameLOC4352767, LOL2, Os12g0611000, OsJ_36836
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family LSD
Protein Properties Length: 173aa    MW: 18054 Da    PI: 8.5504
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41700.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD143.55.3e-14731125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      C+gCr++L YPrGApsV+Ca+C++V
  LOC_Os12g41700.1  7 CHGCRNILLYPRGAPSVCCAVCHAV 31
                      ************************9 PP
2zf-LSD148.41.5e-154771125
           zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                      CggCrtlL+Y+r+A+sVRC++CdtV
  LOC_Os12g41700.1 47 CGGCRTLLMYTRNATSVRCSCCDTV 71
                      ************************9 PP
3zf-LSD150.92.5e-1685109125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+C+t+L+YP+GApsV+Ca+C+++
  LOC_Os12g41700.1  85 CGQCQTVLMYPYGAPSVKCAICNFI 109
                       ***********************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.8E-12431IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-11731IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010531.3E-154474IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-124771IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1182110IPR005735Zinc finger, LSD1-type
PfamPF069432.2E-1485109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
GO:0005634Cellular Componentnucleus
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0025281anatomypollen
PO:0001015developmental stageK second mitotic division stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MQSQIVCHGC RNILLYPRGA PSVCCAVCHA VSSTAPSPGM DIAHLICGGC RTLLMYTRNA  60
TSVRCSCCDT VNLVRPVSSI AHLNCGQCQT VLMYPYGAPS VKCAICNFIT NTGMNTMRHL  120
PPNGTSYTAP STSAPTTQSQ NVTVVVENPM TVDAKGKLVS NVVVGVTTGG KK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.240460.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO379885000.0
Expression AtlasQ2QMB3-
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41700
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1118370.0AK111837.1 Oryza sativa Japonica Group cDNA clone:J023139G05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620418.11e-122protein LOL2
SwissprotQ2QMB31e-123LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0D3HWM11e-120A0A0D3HWM1_9ORYZ; Uncharacterized protein
TrEMBLI1R7S11e-120I1R7S1_ORYGL; Uncharacterized protein
STRINGOS12T0611000-011e-121(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.71e-49LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  3. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]