PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41650.5
Common NameLOC4352761
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bHLH
Protein Properties Length: 318aa    MW: 33588.6 Da    PI: 6.7765
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41650.5genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.95e-10273301435
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TT CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskaps 35 
                        hn  ErrRRdriN+++  L+el+P++   ++
  LOC_Os12g41650.5 273 VHNLSERRRRDRINEKMKALQELIPHC---NK 301
                       6*************************8...54 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.72E-8266301No hitNo description
SuperFamilySSF474597.33E-10267306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.001269317IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-10273306IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7273301IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE KTTAAAAAAM  60
AEDESASWFQ YPVDDVLEKD LFTELFGEMT AAGGGGGDVR RAACKEERGA VAAFQSRMMP  120
PPWPARGKAE FGDVDDVCGV SEVVMAKMDG AAAAETVGES SMLTIGSSIC GSNHVQTPPV  180
GNGKAGAGTA GAARRAHDTA TVASSSMRSR SCTAKAEPRD VAAAGVGGKR KQRGGAAMES  240
GSPSEDVEFE SAAATCSPAQ KTTTAKRRRA AEVHNLSERR RRDRINEKMK ALQELIPHCN  300
KVNYSKFNLQ APLHNYN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1266281RRRAAEVHNLSERRRR
2277282ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.116750.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329767810.0
Expression AtlasQ2QMB8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41650.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41650
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0667630.0AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence.
GenBankCT8297130.0CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015618074.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618075.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618076.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
RefseqXP_015618077.10.0transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X1
TrEMBLQ2QMB80.0Q2QMB8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRINGORUFI12G20600.10.0(Oryza rufipogon)
STRINGOS12T0610200-010.0(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-23phytochrome interacting factor 3-like 5
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]