PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g41650.3 | ||||||||
Common Name | LOC4352761, Os12g0610200, OSNPB_120610200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 446aa MW: 47020.3 Da PI: 6.5997 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 54 | 3e-17 | 273 | 319 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K +Ka++L +A+eY+ksLq LOC_Os12g41650.3 273 VHNLSERRRRDRINEKMKALQELIPHC-----NKTDKASMLDEAIEYLKSLQ 319 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 6.30E-19 | 266 | 323 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 4.6E-21 | 266 | 326 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 4.19E-21 | 267 | 332 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.559 | 269 | 318 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.4E-14 | 273 | 319 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.1E-19 | 275 | 324 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MNQFVPDWNT TSMGDGFAPL GEDDGLVELL WCNGHVVMQS QAPRKPPRPE KTTAAAAAAM 60 AEDESASWFQ YPVDDVLEKD LFTELFGEMT AAGGGGGDVR RAACKEERGA VAAFQSRMMP 120 PPWPARGKAE FGDVDDVCGV SEVVMAKMDG AAAAETVGES SMLTIGSSIC GSNHVQTPPV 180 GNGKAGAGTA GAARRAHDTA TVASSSMRSR SCTAKAEPRD VAAAGVGGKR KQRGGAAMES 240 GSPSEDVEFE SAAATCSPAQ KTTTAKRRRA AEVHNLSERR RRDRINEKMK ALQELIPHCN 300 KTDKASMLDE AIEYLKSLQL QLQMMWMGGG MAPPAVMFPA AGVHQYMQRM GAVGMGPPHM 360 ASLPRMPPFM APPPAAVQSS PVVSMADPYA RCLAVDHLQP PPPMHYLQGM SFYQLAAAKN 420 LQQQQNTAEA PPPPPAGGNR AAADS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 266 | 281 | RRRAAEVHNLSERRRR |
2 | 277 | 282 | ERRRRD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11675 | 0.0 | callus| flower| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32976781 | 0.0 | ||||
Expression Atlas | Q0IM00 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g41650.3 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g41650 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK066763 | 0.0 | AK066763.1 Oryza sativa Japonica Group cDNA clone:J013074J19, full insert sequence. | |||
GenBank | CT829713 | 0.0 | CT829713.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCFA240D01, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618078.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
Refseq | XP_015618079.1 | 0.0 | transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like isoform X2 | ||||
TrEMBL | A0A0E0RJV2 | 0.0 | A0A0E0RJV2_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZML0 | 0.0 | A2ZML0_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q0IM00 | 0.0 | Q0IM00_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed | ||||
STRING | ORUFI12G20600.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0610200-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.3 | 2e-33 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g41650.3 |
Entrez Gene | 4352761 |
Publications ? help Back to Top | |||
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