PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g41230.1 | ||||||||
Common Name | LOC4352740, Os12g0605500, OSNPB_120605500 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | CPP | ||||||||
Protein Properties | Length: 761aa MW: 82024.8 Da PI: 6.99 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 49.6 | 7.9e-16 | 455 | 494 | 2 | 41 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C N + LOC_Os12g41230.1 455 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNMPS 494 689**********************************865 PP | |||||||
2 | TCR | 50.7 | 3.4e-16 | 539 | 577 | 1 | 39 |
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN LOC_Os12g41230.1 539 RHKRGCNCKKSSCLKKYCECYQGGVGCSVSCRCEGCKNA 577 589***********************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 6.5E-16 | 454 | 495 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 35.454 | 455 | 579 | IPR005172 | CRC domain |
Pfam | PF03638 | 4.4E-12 | 457 | 492 | IPR005172 | CRC domain |
SMART | SM01114 | 4.5E-17 | 539 | 580 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.1E-11 | 541 | 577 | IPR005172 | CRC domain |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 761 aa Download sequence Send to blast |
MDTPDRPPRA AATAAVEDSP VFNFINSLSP IPPPKPSDSA HNVQLFKSSD LAPVSSIFAS 60 PHVNPAKESK LPIREDSVQL SRESHSPNSV RTRTGATSSI IRMIRCKNIV SENCSITCYL 120 NDSTSSKASQ PIQLCGGSAE SDTNQNTDGK KDPTTEQDRT DIEFVLLDQC GPEKMDSSQS 180 GNNACENQLS EQHKDELGSF DGGYMFAHQP HSDMLRLAPP FESETQLVNE TLQTDNVYCE 240 TLLTDGPSGS YTQNSAPDPH LYWAGAVEGC ATDYTPQMLP GACQSQLVPN DQINNKLNEP 300 SDYMPMDHNV SSQNLRGMRR RCLFNEKSGA ANEGAKNSSA RHSTNSTTPR RKISSSDNNL 360 KTLRTPPCAL PGIGLHLNAL ATVPKDKMVP HNDIQSSLNQ ASNVPSAVGS SPPTDDPHTI 420 NDDSSQTAVV AYVGESSQGS PKKKRHKFDN GDGTSCKRCS CKKSKCLKLY CECFHAGVFC 480 SEPCSCQGCL NMPSNMETVL STREQIESRN PLAFAPKVIR TEPGQELADD SNKTPASSRH 540 KRGCNCKKSS CLKKYCECYQ GGVGCSVSCR CEGCKNAFGR REGVALLGIE EAKRGCEEKD 600 GGVKEETTDN DKQLVIYQDS INLTPAESVL ATPSVVDYRP LVALPPLSSK KPRSSTKLGG 660 YSSRLEGHLK SDILLSPFES YAEMMLGDGT SNVLKGESSP QTSVKVVSPN KKRVSPPRIG 720 TGLSPICKSG RKLILKSIPS FPSLGVDITN EDPNTSSLAP * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 7e-17 | 459 | 576 | 14 | 120 | Protein lin-54 homolog |
5fd3_B | 7e-17 | 459 | 576 | 14 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.18579 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32983965 | 0.0 | ||||
Expression Atlas | Q2QMG6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g41230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g41230 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK073942 | 0.0 | AK073942.1 Oryza sativa Japonica Group cDNA clone:J033075J10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620275.1 | 0.0 | protein tesmin/TSO1-like CXC 2 | ||||
TrEMBL | Q2QMG6 | 0.0 | Q2QMG6_ORYSJ; Os12g0605500 protein | ||||
STRING | OS12T0605500-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12746 | 26 | 30 | Representative plant | OGRP993 | 17 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G22780.1 | 4e-74 | Tesmin/TSO1-like CXC domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g41230.1 |
Entrez Gene | 4352740 |
Publications ? help Back to Top | |||
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