PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41060.1
Common NameLOC9270132, Os12g0603300, OSNPB_120603300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 324aa    MW: 34249 Da    PI: 4.3968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41060.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP247.54.5e-15157207255
               AP2   2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                       g+ GV+++   grW AeIrd    + ++  rf++g+f+ta +Aa a++a  ++l+g
  LOC_Os12g41060.1 157 GFLGVHQRT-YGRWSAEIRD----NvIKgSRFWIGTFDTALDAALAYDAVSRRLYG 207
                       788***999.8*********....66345********************9999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.3E-18157221IPR001471AP2/ERF domain
PROSITE profilePS5103218.004157215IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-17157216IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-22158216IPR001471AP2/ERF domain
PRINTSPR003673.6E-5158169IPR001471AP2/ERF domain
PfamPF008475.1E-8160207IPR001471AP2/ERF domain
PRINTSPR003673.6E-5181197IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000032anatomytetrad of microspores
PO:0001029developmental stageE tetrad stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MCGGGPDNHH AITVAADLPP PPPSVVAVEM APPRGHRPGK EVEYNEEEED DDDEYDGREF  60
EEEFLRFSMM VDEEDDDGDD DDEVEVEIIA VVSPPHRPLV GARGTTSAVE SVTNLQARTS  120
PLPNPVVPQT GTKASKRGDS GAKAKPAAAK KRRSKHGFLG VHQRTYGRWS AEIRDNVIKG  180
SRFWIGTFDT ALDAALAYDA VSRRLYGLNA KTNFPAAAGE DDLPPPPPPA KPCSSTKRPK  240
KCNTSGDLGA AAAPPQAVDT PAAAAAGVEL TSLLCSVAAQ AQEVSDGWEF IQELLLLGGG  300
VSPLDYLNGQ ELAGAAVGDL WSF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-12153215263ATERF1
3gcc_A1e-12153215263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154KKRRSK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.699810.0leaf| panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293740.0
Expression AtlasQ2QMI3-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41060
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2875440.0AK287544.1 Oryza sativa Japonica Group cDNA, clone: J065016L10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619473.10.0ethylene-responsive transcription factor ERF023
TrEMBLQ2QMI30.0Q2QMI3_ORYSJ; AP2 domain containing protein, expressed
STRINGOS12T0603300-020.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15980813
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75490.19e-10ERF family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]