PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g41030.1
Common NameOsJ_36773
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 141aa    MW: 15750.6 Da    PI: 7.7982
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g41030.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.43.5e-181568256
               AP2  2 gykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkklege 56
                      +++GV w+k +grW AeIr    +g   +r+r ++g+++taeeAa+a++a +++l+g+
  LOC_Os12g41030.1 15 HFRGVQWRK-SGRWSAEIRS---RGawgRRRRLWIGTYDTAEEAARAYDAEARRLHGA 68
                      69*******.7******999...4566557**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.85E-211474No hitNo description
PfamPF008472.7E-121567IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.4E-241575IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-191575IPR016177DNA-binding domain
SMARTSM003801.4E-231581IPR001471AP2/ERF domain
PROSITE profilePS5103220.4811575IPR001471AP2/ERF domain
PRINTSPR003672.5E-71627IPR001471AP2/ERF domain
PRINTSPR003672.5E-74157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MTMMPSGGGA RVRAHFRGVQ WRKSGRWSAE IRSRGAWGRR RRLWIGTYDT AEEAARAYDA  60
EARRLHGAKA KTNFPPPPPP TAVHDDHVDL EAHIKFLSEV ELDGDQETPP ESQVGDDQAG  120
GQHQHHHGCR LDHLLLMMCN *
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QMI6
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g41030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g41030
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL8375280.0AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankCP0126200.0CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619316.14e-99ethylene-responsive transcription factor LEP-like
SwissprotQ9FE671e-19ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLA0A0E0RJP21e-100A0A0E0RJP2_ORYRU; Uncharacterized protein
TrEMBLA2ZMF81e-100A2ZMF8_ORYSI; Uncharacterized protein
TrEMBLQ2QMI61e-100Q2QMI6_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI12G20090.11e-100(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]