PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 14755.1 Da PI: 6.7139 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 23.7 | 1.2e-07 | 5 | 31 | 29 | 55 |
AP2 29 krfslgkfgtaeeAakaaiaarkkleg 55 r ++g+f+taeeAa a++a +++l+g LOC_Os12g40960.1 5 SRSWVGTFDTAEEAAWAYDAVARRLYG 31 567*********************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.825 | 1 | 39 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-5 | 1 | 45 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 5.17E-11 | 3 | 39 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.30E-13 | 3 | 40 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-14 | 3 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MIKGSRSWVG TFDTAEEAAW AYDAVARRLY GPNARTNFRI PPPPVAPLLP APAVANKKMD 60 SKRKKPVVVA EMVAPAGVEP AAGEMAPVLL GNALEATNGW EFEPYSCMGL VVGGAVYNFA 120 DEPALVEKAF VVPFRNPL* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QMJ3 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL837528 | 0.0 | AL837528.5 Oryza sativa chromosome 12, . BAC OSJNBb0062H20 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006664718.2 | 9e-16 | PREDICTED: dehydration-responsive element-binding protein 1B-like | ||||
TrEMBL | Q2QMJ3 | 5e-93 | Q2QMJ3_ORYSJ; AP2 domain containing protein | ||||
STRING | OMERI12G12700.1 | 7e-61 | (Oryza meridionalis) | ||||
STRING | OMERI12G12760.1 | 2e-60 | (Oryza meridionalis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP15615 | 10 | 14 | Representative plant | OGRP6 | 16 | 1718 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40960.1 |
Publications ? help Back to Top | |||
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