PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40920.4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 165aa MW: 18771.5 Da PI: 9.4257 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 53.9 | 3.9e-17 | 81 | 136 | 4 | 59 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr+rr+ +NRe+ArrsR+RK+a + Le v +L +eN +L+k+l+ +++++++ LOC_Os12g40920.4 81 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 136 69*****************************************7777777776654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.2E-18 | 74 | 142 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 12.047 | 80 | 143 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.9E-14 | 81 | 135 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 9.14E-13 | 82 | 134 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.8E-14 | 82 | 135 | No hit | No description |
CDD | cd14702 | 1.74E-16 | 83 | 133 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 85 | 100 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MAFQLEAKLQ ESSLGYLNLQ ASDTSQLVSQ DSFNGYGSTR VTNSNAIHED DDQGKPANSG 60 TSKEQSDDDG DLEEDTDPVN AKRTRRMLSN RESARRSRKR KQAHLNDLES QVSQLRSENA 120 SLQKRLSDMT QKYKQSTTEY GNLQDDMNAM RRKVWRCKKR NKTF* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 94 | 100 | RRSRKRK |
2 | 94 | 101 | RRSRKRKQ |
3 | 96 | 101 | SRKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.26437 | 7e-83 | leaf| panicle| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 297729372 | 7e-83 |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in developing seeds from 10 to 30 days after flowering (DAF). {ECO:0000269|PubMed:11133985}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that binds to the DNA specific sequence 5'-TGAGTCA-3' found in seed storage protein gene promoters. {ECO:0000269|PubMed:11133985}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40920.4 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40920 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK287981 | 0.0 | AK287981.1 Oryza sativa Japonica Group cDNA, clone: J075085P10, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620823.1 | 1e-113 | light-inducible protein CPRF2 isoform X4 | ||||
Swissprot | Q6H500 | 2e-26 | RSBZ4_ORYSJ; bZIP transcription factor RISBZ4 | ||||
TrEMBL | A0A0N7KUB6 | 1e-106 | A0A0N7KUB6_ORYSJ; Os12g0601800 protein | ||||
STRING | OS12T0601800-01 | 1e-107 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24800.1 | 3e-17 | basic leucine zipper 9 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40920.4 |
Publications ? help Back to Top | |||
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