PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40920.3
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 177aa    MW: 19844.7 Da    PI: 5.3558
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40920.3genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.74.5e-1781136459
                       XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        kr+rr+ +NRe+ArrsR+RK+a +  Le  v +L +eN +L+k+l+ +++++++ 
  LOC_Os12g40920.3  81 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 136
                       69*****************************************7777777776654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.2E-1874142IPR004827Basic-leucine zipper domain
PROSITE profilePS5021712.04780143IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.4E-1480135No hitNo description
PfamPF001702.6E-1481135IPR004827Basic-leucine zipper domain
SuperFamilySSF579599.38E-1382134No hitNo description
CDDcd147022.39E-1883133No hitNo description
PROSITE patternPS00036085100IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MAFQLEAKLQ ESSLGYLNLQ ASDTSQLVSQ DSFNGYGSTR VTNSNAIHED DDQGKPANSG  60
TSKEQSDDDG DLEEDTDPVN AKRTRRMLSN RESARRSRKR KQAHLNDLES QVSQLRSENA  120
SLQKRLSDMT QKYKQSTTEY GNLQDDMNAM RRKVFSFCCC DRLITSSTSF IPIEGL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
194100RRSRKRK
294101RRSRKRKQ
396101SRKRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.264371e-109leaf| panicle| stem| vegetative meristem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293721e-109
Expression AtlasQ2QMJ8-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40920.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40920
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2879810.0AK287981.1 Oryza sativa Japonica Group cDNA, clone: J075085P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620822.11e-107light-inducible protein CPRF2 isoform X3
TrEMBLQ2QMJ81e-122Q2QMJ8_ORYSJ; BZIP transcription factor family protein, expressed
STRINGOS12T0601800-011e-107(Oryza sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G24800.12e-17basic leucine zipper 9
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]