PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g40920.1

Common Name

LOC107276775, OsJ_36768

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bZIP

Protein Properties

Length: 302aa MW: 32115.5 Da PI: 5.4719

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g40920.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	52.4	1.2e-16	115	170	4	59
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 kr+rr+ +NRe+ArrsR+RK+a + Le v +L +eN +L+k+l+ +++++++ LOC_Os12g40920.1 115 AKRTRRMLSNRESARRSRKRKQAHLNDLESQVSQLRSENASLQKRLSDMTQKYKQS 170 69*****************************************7777777776654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.2E-18	108	176	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.047	114	177	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	7.2E-14	115	169	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	8.5E-14	116	169	No hit	No description
SuperFamily	SSF57959	2.25E-12	116	168	No hit	No description
CDD	cd14702	1.48E-18	117	167	No hit	No description
PROSITE pattern	PS00036	0	119	134	IPR004827	Basic-leucine zipper domain
Pfam	PF12498	1.2E-15	183	279	IPR020983	Basic leucine-zipper, C-terminal

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 302 aa Download sequence Send to blast
MKRGGAGVGG GGGGGDPGAY AAVLKTKLDL YCAAVAKSME AKLQESSLGY LNLQASDTSQ 60 LVSQDSFNGY GSTRVTNSNA IHEDDDQGKP ANSGTSKEQS DDDGDLEEDT DPVNAKRTRR 120 MLSNRESARR SRKRKQAHLN DLESQVSQLR SENASLQKRL SDMTQKYKQS TTEYGNLQDD 180 MNAMRRKVNI AEEAVRRVTG IGLQLFTTSE MPASSMPVSS GVSDAASAAA AAALVEDDWT 240 NCSLPDEAIP VPSAAMALRS PSVRRVASLE NLQKRIHAGD VTHFEAASAL SLPEATACDN 300 K*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	128	134	RRSRKRK
2	128	135	RRSRKRKQ
3	130	135	SRKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.26437	0.0	leaf\| panicle\| stem\| vegetative meristem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	297729372	0.0
Expression Atlas	Q2QMJ7	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g40920.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g40920

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CT837661	0.0	CT837661.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSN063K17, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620821.1	0.0	light-inducible protein CPRF2 isoform X2
TrEMBL	Q2QMJ7	0.0	Q2QMJ7_ORYSJ; BZIP transcription factor family protein, expressed
STRING	ORUFI12G20050.1	0.0	(Oryza rufipogon)
STRING	ONIVA12G16860.2	0.0	(Oryza nivara)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7595	29	43
Representative plant	OGRP1839	16	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G28770.2	4e-23	bZIP family protein

Link Out ? help Back to Top
Phytozome	LOC_Os12g40920.1
Entrez Gene	107276775

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]