PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 250aa MW: 26995.4 Da PI: 4.7373 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 37.6 | 4e-12 | 105 | 147 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR +iN+ + +L++l+P + +k ++ a++L k+++Y+ksLq LOC_Os12g40630.1 105 MQKRRCKINENLKTLQQLVPVC----DKSNNQASTLDKTIRYMKSLQ 147 69*******************9....788*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 11.82 | 96 | 146 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-5 | 102 | 152 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-12 | 106 | 154 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.14E-12 | 106 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.17E-10 | 106 | 148 | No hit | No description |
Pfam | PF00010 | 3.1E-9 | 106 | 147 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence Send to blast |
MEMTSYNDVD AGDMFAAADY YSAGAGGDLF DMVWPGRRRR EEDNTSGCLP LSPPPPPELA 60 VDDQLLAGGD GGGGKPVAVA VAEDDDSGER WTEDQVPTDE GICVMQKRRC KINENLKTLQ 120 QLVPVCDKSN NQASTLDKTI RYMKSLQQHA QAMSVGCSMK TAEAAGVTCP FLPPPPSSAL 180 LVIVEEGPTR PWDATARSTS AAATSFDHHH HGALIEKLLQ VVQPYMLSLK TSVRENNAMV 240 MQKPNFYHS* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QMM8 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731743 | 1e-135 | AL731743.2 Oryza sativa chromosome 12, . BAC OSJNBa0001B02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-135 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 1e-135 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025806979.1 | 3e-19 | putative transcription factor bHLH056 | ||||
TrEMBL | Q2QMM8 | 0.0 | Q2QMM8_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | ORUFI12G19860.1 | 1e-139 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP16434 | 10 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G20180.1 | 2e-12 | phytochrome interacting factor 3-like 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40630.1 |
Publications ? help Back to Top | |||
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