PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g40590.1

Common Name

LOC4352709, Os12g0597800, OsJ_36752, OSNPB_120597800

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

bHLH

Protein Properties

Length: 266aa MW: 28864.7 Da PI: 8.2901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g40590.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.9	8.7e-14	156	202	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h E+rRR+riN++f L++l+P + K s +++L ++++Y+ksLq LOC_Os12g40590.1 156 THGLTEKRRRSRINEKFKMLQRLVPGC-----DKCSQSSTLDRTIHYMKSLQ 202 78999*******************9.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	6.78E-14	138	206	No hit	No description
SuperFamily	SSF47459	3.66E-17	150	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.186	152	201	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-17	155	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.8E-11	156	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.9E-13	158	207	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0000032	anatomy	tetrad of microspores
PO:0001029	developmental stage	E tetrad stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 266 aa Download sequence Send to blast
MMSFPYSSGD LGEATTAAAA AVDMITLDQM FRDYDASTGD DLFELVWESC GGGEIDSGAG 60 EVQPAGVPCC RRLLPGSSPE PTSEDEMAAW LSTIVTGSGG GGGDDVAAGG DHQDPAVKKP 120 DGEPLTEKMD KKLPTRTEER RRVKHKARRN PGYAETHGLT EKRRRSRINE KFKMLQRLVP 180 GCDKCSQSST LDRTIHYMKS LQQQLQAMYP TMVRPAAVYP VVQPPPAFAA GGPPAASQGG 240 LHRHRRLMVV VSVHHRCRCF RLGRQ*

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	115489421	0.0
Expression Atlas	Q2QMN2	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g40590.1

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g40590

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK108042	0.0	AK108042.1 Oryza sativa Japonica Group cDNA clone:002-137-D10, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619633.1	0.0	transcription factor PHYTOCHROME INTERACTING FACTOR-LIKE 13-like
TrEMBL	B8BMU4	0.0	B8BMU4_ORYSI; Uncharacterized protein
TrEMBL	Q2QMN2	0.0	Q2QMN2_ORYSJ; Helix-loop-helix DNA-binding domain containing protein, expressed
STRING	OS12T0597800-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16578	11	11
Representative plant	OGRP258	16	128

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	1e-15	bHLH family protein

Link Out ? help Back to Top
Phytozome	LOC_Os12g40590.1
Entrez Gene	4352709

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]