PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g40570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 366aa MW: 38551.7 Da PI: 10.2433 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 87.4 | 1.2e-27 | 297 | 350 | 3 | 55 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYege 55 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYe++ LOC_Os12g40570.1 297 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEEN 350 9*************************988**********************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 1.3E-18 | 248 | 293 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-29 | 283 | 350 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.36 | 290 | 356 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-23 | 293 | 349 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.8E-30 | 295 | 355 | IPR003657 | WRKY domain |
Pfam | PF03106 | 6.7E-23 | 297 | 349 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005516 | Molecular Function | calmodulin binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGGGGGHAR GRMAGRSRPS AVLREKGFLE SSSGGGQLGM MMSGAATPST SSAAHLRNRI 120 GGGSGVPPDS LRGLDLVSSS SKGGAHQFDP PKLVQPLSVQ FQFGATAHRY PFQQHQHQQK 180 LQAEMFKRSN SGISLKFDSP SATGTMSSAF MSSLSMDGSV ASLEGKPPFH LISGPVASDP 240 VNAHHVPKRR CTGRGEDGSG KCATTGRCHC SKRRKLRIKR SIKVPAISNK IADIPPDEYS 300 WRKYGQKPIK GSPHPRGYYK CSSVRGCPAR KHVERCVDDP AMLIVTYEEN AEAPSFCSGT 360 VGPVM* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-17 | 283 | 348 | 2 | 66 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19013 | 0.0 | callus| flower| leaf| panicle| root| seed| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32980672 | 0.0 | ||||
Expression Atlas | Q2QMN5 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: More abundant in apices and young leaf primordia than in fully expanded leaf tissues. {ECO:0000269|PubMed:16243907}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g40570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g40570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK070648 | 0.0 | AK070648.1 Oryza sativa Japonica Group cDNA clone:J023062B16, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620342.1 | 0.0 | protein WRKY1 | ||||
Swissprot | Q32SG4 | 2e-85 | WRKY1_MAIZE; Protein WRKY1 | ||||
TrEMBL | A0A0E0RJK8 | 0.0 | A0A0E0RJK8_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QMN5 | 0.0 | Q2QMN5_ORYSJ; WRKY DNA binding domain containing protein, expressed | ||||
STRING | ORUFI12G19820.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2859 | 38 | 87 | Representative plant | OGRP1817 | 15 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 3e-65 | WRKY DNA-binding protein 21 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g40570.1 |
Publications ? help Back to Top | |||
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