PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g40070.1
Common NameOs12g0591300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family B3
Protein Properties Length: 662aa    MW: 75285.4 Da    PI: 8.4639
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g40070.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.94.9e-1515931498
                      T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3 14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
                      + + +p kfa+ + g+   s  ++le ++g++++v++   k  ++ vl++GW  F+++ +Lk+ D++vF ++g+s+f  +v++f+
  LOC_Os12g40070.1 15 DFVAVPTKFANFIRGQ--ISEVVKLEVPNGKTYDVQV--AKEHNELVLRSGWGAFARDYELKQCDILVFAYSGSSRF--KVRIFN 93
                      56789*****999777..6779***************..*********************************99999..999987 PP
2B339.59.8e-132122881698
                       EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                B3  16 lvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                        ++ k fa++  g     s   +le ++g++++v++  +k  ++ v+++GW+ F+ a +L++gD++ F ++g+s f  +v++f+
  LOC_Os12g40070.1 212 KTILKMFAKNVqG-L--ISGVAKLEVPDGKTYDVEI--SKEHNELVFRSGWEVFAIAYELEQGDILAFGYSGNSHF--KVQIFN 288
                       4788999977744.4..35579**************..**********************************9999..999987 PP
3B336.77.3e-12445527992
                       HHHHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE.. CS
                B3   9 dvlksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr.sefel 92 
                        + +sg lv+ k++a ++ ++  +++t++l ++ g ++W++ l  +   +  y l++GW +F + n L+egD++vF+ +++ ++  l
  LOC_Os12g40070.1 445 TSVASGSLVFCKDYAVRYLLD--QNRTIKLCQSGGsKTWDISL--DMDTDDlYALSTGWLDFFRCNLLQEGDICVFEASKSkRGVAL 527
                       4556778***********888..4558888887777*******..8888888*************************8876444444 PP
4B337.73.5e-125716571399
                       TT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE-S CS
                B3  13 sgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfrk 99 
                       + r +++ k+a+++   k +   ++l+  e+  + +  l ++ + + + l kGW +Fv++n+L+  D+++F+l+++ ++ +++v+++rk
  LOC_Os12g40070.1 571 QERKCFSVKYASKYLPHKDQ--NMRLRLpETKYKCKAALHIDTSTNLHKLLKGWGKFVNDNKLEIHDICLFQLMKNkKKLTMTVHIIRK 657
                       45677888999999433334..5666663455677777777999999***************************999*********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.279295IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-20397IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-18597IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.9E-6895IPR003340B3 DNA binding domain
CDDcd100172.48E-191093No hitNo description
PfamPF023621.7E-121493IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.0E-16198292IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.0E-5201290IPR003340B3 DNA binding domain
SuperFamilySSF1019361.79E-16202292IPR015300DNA-binding pseudobarrel domain
PfamPF023621.3E-10213288IPR003340B3 DNA binding domain
CDDcd100171.83E-14216288No hitNo description
PROSITE profilePS5086310.278232290IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-14430534IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-15431535IPR015300DNA-binding pseudobarrel domain
CDDcd100175.59E-11436533No hitNo description
PROSITE profilePS5086310.644437535IPR003340B3 DNA binding domain
SMARTSM010190.0012439535IPR003340B3 DNA binding domain
PfamPF023622.1E-9445527IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.4E-13556658IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.69E-16558660IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.0061560658IPR003340B3 DNA binding domain
PfamPF023628.0E-11569657IPR003340B3 DNA binding domain
CDDcd100172.68E-10571656No hitNo description
PROSITE profilePS508638.614618658IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MGDQKRSFIN VMIGDFVAVP TKFANFIRGQ ISEVVKLEVP NGKTYDVQVA KEHNELVLRS  60
GWGAFARDYE LKQCDILVFA YSGSSRFKVR IFNPSGCEKE LSCVMMNNTP CGHEGSMSYH  120
DNHLQSPSES SSFFNISLPP HSPFQELSGV DSTSLLVSDP PNMQQFCLRC SWTNPKRLAK  180
PSLAIASLSH QHLAFDKTRC MFILKIENDT LKTILKMFAK NVQGLISGVA KLEVPDGKTY  240
DVEISKEHNE LVFRSGWEVF AIAYELEQGD ILAFGYSGNS HFKVQIFNPS NCEKELSCVV  300
MNRSISDDNH RQSPRRERMN KPSTTCMDCI TNHYWLHMDD RERYFFKVMM SVSDIKDELA  360
IPKKFAANVR GKIPEQVRLE VSDDVPSSED IKDPMSSGGL QKSKKSCYVL PMLYNMTSAQ  420
ESEVLALEKK IQPQIPLYIT AMDKTSVASG SLVFCKDYAV RYLLDQNRTI KLCQSGGSKT  480
WDISLDMDTD DLYALSTGWL DFFRCNLLQE GDICVFEASK SKRGVALTFH PFKESHCPKS  540
SEYTLSTKSP TRRVPKRDYF ATNLTNLTDQ QERKCFSVKY ASKYLPHKDQ NMRLRLPETK  600
YKCKAALHID TSTNLHKLLK GWGKFVNDNK LEIHDICLFQ LMKNKKKLTM TVHIIRKGEC  660
S*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.700790.0panicle
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO2977293460.0
Expression AtlasQ2QMT7-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g40070.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g40070
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2419930.0AK241993.1 Oryza sativa Japonica Group cDNA, clone: J075099J10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ2QMT70.0Y1214_ORYSJ; B3 domain-containing protein Os12g0591400
TrEMBLI1R7J50.0I1R7J5_ORYGL; Uncharacterized protein
STRINGORGLA12G0150100.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-15B3 family protein
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]