PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g39330.1
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family ERF
Protein Properties Length: 403aa    MW: 42370.2 Da    PI: 4.6106
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g39330.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2605.5e-1970119255
               AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++ GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  LOC_Os12g39330.1  70 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 119
                       789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.25E-3069126No hitNo description
Gene3DG3DSA:3.30.730.102.9E-2770126IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-1970127IPR016177DNA-binding domain
PfamPF008479.9E-1470119IPR001471AP2/ERF domain
PROSITE profilePS5103219.55970127IPR001471AP2/ERF domain
SMARTSM003804.6E-3570133IPR001471AP2/ERF domain
PRINTSPR003675.8E-87182IPR001471AP2/ERF domain
PRINTSPR003675.8E-893109IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MAFHLQPHSL TQAKLAIDRS SSMPPSMATA RVASPSTDRK RKASSEDDID AAAAAAALTS  60
PLAPARGRKR FVGVRQRPSG RWVAEIKDTI QKIRVWLGTF DTAEEAARAY DEAACLLRGA  120
NTRTNFWPRP SPPPAAVAPP ETTTTPALPS KVTNLLLLRL KARNQQVVDA GAAAPQEAAL  180
LQLQQQTPAS CQEVFVRSHG EEYGFHVDDF LSDACSNEQY SGDSSLGLDD DDGEVEDEEE  240
EELDFQFMDV APGASSAAAE AGLGGEGALC SPFEMVAAEL GGAVDVAAHD AMRQMDYERK  300
ISASLYALTG VSECLRIRAA AGATAAARDH LTGLREACRK KQKFAAAAAA PPQQQEPSPP  360
PQQPETPASS GGGMSETASG GGGDGDVLMW SSLDLAPICH MA*
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329948150.0
Expression AtlasQ2QN14-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g39330.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g39330
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7724260.0AL772426.5 Oryza sativa chromosome 12, . BAC OJ1310_C03 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7724270.0AL772427.4 Oryza sativa chromosome 12, . BAC OJ1260_B01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619512.20.0ethylene-responsive transcription factor ERN1
TrEMBLA0A0E0RJA30.0A0A0E0RJA3_ORYRU; Uncharacterized protein
TrEMBLQ2QN140.0Q2QN14_ORYSJ; AP2 domain containing protein, expressed
STRINGORUFI12G19000.10.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP54823052
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.17e-22related to AP2 11
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]