PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os12g38960.1 | ||||||||
Common Name | OsJ_36648 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 364aa MW: 39947.5 Da PI: 6.8574 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 21.5 | 6.1e-07 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ C+k+Fs++ +L+ H+++H LOC_Os12g38960.1 71 QCQMCSKVFSTSGSLREHMMMH 92 7*******************99 PP | |||||||
2 | zf-C2H2 | 16.4 | 2.5e-05 | 275 | 297 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ CgksF + L H+r+H LOC_Os12g38960.1 275 HRCNTCGKSFGSGQALGGHMRRH 297 79********************9 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 7.9E-10 | 10 | 34 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.058 | 10 | 39 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.57 | 10 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 12.57 | 70 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 3.3E-4 | 70 | 92 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 3.6E-7 | 71 | 96 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.86E-10 | 71 | 92 | No hit | No description |
Pfam | PF13894 | 4.4E-4 | 71 | 92 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 72 | 92 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.86E-10 | 270 | 297 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 3.6E-4 | 275 | 297 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF13912 | 3.3E-11 | 275 | 298 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.907 | 275 | 302 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0079 | 275 | 297 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 277 | 297 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 364 aa Download sequence Send to blast |
MAPRGKPWKH CCNKCDKSFR SGNALGGHMS CHRSVGNQPK STSSPPTVVD LHMPLLSSCD 60 DNLLLLPPET QCQMCSKVFS TSGSLREHMM MHGGEKVVVK AEEEAAGLIE ALGIADSMQD 120 VMVFSSVKRK RSFRSKRQTP ALSLEEIEAA DALLLLSGCF DKTSAYEDCY LGDIEDSSLR 180 SIVLTEVNMN AVDRCSVRSV GSKEPINDNN SGYKDCYGQS DKENCLIVPK EEMDPNDFDH 240 ELVRDAALRK PRTDNSDEEM KFGDLPAAAM KDNSHRCNTC GKSFGSGQAL GGHMRRHYVR 300 KCNRQRGVAD HAGSVLMKVQ KLKLRLDPIL FDVTLPALTD GDCCISVGVK PEPQLWCVTS 360 NLQ* |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.32996 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32987350 | 0.0 | ||||
Expression Atlas | B9GDY3 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os12g38960.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os12g38960 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL928774 | 0.0 | AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619008.1 | 0.0 | uncharacterized protein LOC4352630 isoform X1 | ||||
TrEMBL | B9GDY3 | 0.0 | B9GDY3_ORYSJ; Uncharacterized protein | ||||
TrEMBL | Q2QN52 | 0.0 | Q2QN52_ORYSJ; Os12g0578800 protein | ||||
STRING | OS12T0578800-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9112 | 22 | 29 | Representative plant | OGRP14650 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G37430.1 | 2e-07 | C2H2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os12g38960.1 |