PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g38940.1
Common NameLOC4352628, Os12g0578600, OsJ_36646, OSNPB_120578600
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C2H2
Protein Properties Length: 361aa    MW: 39303 Da    PI: 4.1797
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g38940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.74.6e-06829223
                      EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                      +C+ Cgk F+r+ +L +H  t+
  LOC_Os12g38940.1  8 PCQFCGKNFKRRGDLLNHELTC 29
                      6*****************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.787741IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MASEWDSPCQ FCGKNFKRRG DLLNHELTCK YISDVHPQTE SSGDAQARKD ILGFHIPRQK  60
RTVPAFPASD YAQGGINGAT SEVKVDWDPE EETDVLEALL LLREQPAYPG EETFSDDEPG  120
AGNVDDEPAA SNNPDQVLKM CSDKGSSPVE CYGGDERRVG ACAIAGVEED DLSPNVGCRG  180
VTDCVDESDV IQKQKRKPDL SVADLRDLVE MKQQNMKADT NIHDQGHPSV MQMQKNELSL  240
DLLPHKNSSD HEVPTLSVSS MDDPDGLVST DTNSDKETET VNVGIDINIP EQRESSVTRM  300
QNEKLGLNLL PRNDSSGHEV PILSVSSTDD LNSLIPTDTS SDKDTNSNVA DRLGHCPAQE  360
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.530570.0flower
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329806580.0
Expression AtlasQ2QN54-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g38940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g38940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0706340.0AK070634.1 Oryza sativa Japonica Group cDNA clone:J023055E06, full insert sequence.
GenBankAL9287740.0AL928774.3 Oryza sativa chromosome 12, . BAC OSJNBa0078O17 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619004.10.0uncharacterized protein LOC4352628
RefseqXP_015619005.10.0uncharacterized protein LOC4352628
RefseqXP_015619006.10.0uncharacterized protein LOC4352628
RefseqXP_015619007.10.0uncharacterized protein LOC4352628
TrEMBLA0A0E0RJ590.0A0A0E0RJ59_ORYRU; Uncharacterized protein
TrEMBLQ2QN540.0Q2QN54_ORYSJ; Os12g0578600 protein
STRINGORUFI12G18650.10.0(Oryza rufipogon)
STRINGOS12T0578600-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP157581111
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]