PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g37970.2 | ||||||||
Common Name | LOC4352559, MYB17, MYBAS2, Os12g0567300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB_related | ||||||||
Protein Properties | Length: 178aa MW: 20118.8 Da PI: 6.0093 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 3.8e-16 | 2 | 43 | 5 | 48 |
-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++ E+ l++++++++G++ W++Iar+++ gRt++++k++w++++ LOC_Os12g37970.2 2 SPHEERLILELHARWGNR-WSRIARRLP-GRTDNEIKNYWRTHM 43 899***************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00167 | 1.01E-12 | 1 | 43 | No hit | No description |
SMART | SM00717 | 3.8E-11 | 1 | 45 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 23.752 | 1 | 47 | IPR017930 | Myb domain |
Pfam | PF00249 | 4.0E-14 | 2 | 42 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-19 | 2 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.56E-12 | 2 | 49 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009005 | anatomy | root |
Sequence ? help Back to Top |
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Protein Sequence Length: 178 aa Download sequence Send to blast |
MSPHEERLIL ELHARWGNRW SRIARRLPGR TDNEIKNYWR THMRKKAQER KSNMSPSSSS 60 SSLTYQSCHP ETPSMIIGIE EQELHGGSGC ITSIMKSTPV DMDGYPMDQI WMEIEAPNVL 120 PGPCFDEAKD SASNSLSGPL LPYPMWDYYC PETCLRMDDE IKVAPQFGYG KGVGPCY* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.11638 | 0.0 | callus| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32992423 | 0.0 | ||||
Expression Atlas | Q4JL76 | - |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g37970.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g37970 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ495785 | 0.0 | AJ495785.1 Oryza sativa Japonica Group mRNA for MYB17 protein. | |||
GenBank | DQ075261 | 0.0 | DQ075261.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS2-1 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075262 | 0.0 | DQ075262.1 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS2-2 mRNA, complete cds, alternatively spliced. | |||
GenBank | DQ075263 | 0.0 | DQ075263.2 Oryza sativa (japonica cultivar-group) MYB transcription factor MYBAS2-3 mRNA, complete cds, alternatively spliced. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620228.1 | 1e-130 | myb-related protein MYBAS2 isoform X1 | ||||
Refseq | XP_025877776.1 | 1e-130 | myb-related protein MYBAS2 isoform X2 | ||||
Swissprot | Q4JL76 | 1e-131 | MYBA2_ORYSJ; Myb-related protein MYBAS2 | ||||
TrEMBL | A2ZLS5 | 1e-129 | A2ZLS5_ORYSI; Uncharacterized protein | ||||
TrEMBL | F4MGP3 | 1e-130 | F4MGP3_ORYSJ; Myb family transcription factor, putative, expressed | ||||
STRING | OGLUM12G17720.1 | 1e-130 | (Oryza glumipatula) | ||||
STRING | ORUFI12G17930.1 | 1e-130 | (Oryza rufipogon) | ||||
STRING | OS12T0567300-00 | 1e-130 | (Oryza sativa) | ||||
STRING | ORGLA12G0141600.1 | 1e-130 | (Oryza glaberrima) | ||||
STRING | ORGLA12G0206100.1 | 1e-130 | (Oryza glaberrima) | ||||
STRING | OBART12G16130.1 | 1e-130 | (Oryza barthii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46130.2 | 2e-28 | myb domain protein 48 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g37970.2 |
Entrez Gene | 4352559 |
Publications ? help Back to Top | |||
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