PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g37410.1 | ||||||||
Common Name | LOC9271102, OsOBF1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bZIP | ||||||||
Protein Properties | Length: 146aa MW: 16142.1 Da PI: 6.7906 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 49.4 | 9.9e-16 | 24 | 84 | 3 | 63 |
XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 + +re+r+ +NRe+ArrsR+RK++ ++eL ++v+ L+a N + +++e+ ++a++++e+ LOC_Os12g37410.1 24 DHRREKRRLSNRESARRSRLRKQQHLDELVQEVARLQADNARVLARASEIAGQYARVEQEN 84 679*****************************************************99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 1.0E-17 | 22 | 86 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 11.243 | 24 | 87 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 3.6E-10 | 24 | 70 | No hit | No description |
Pfam | PF00170 | 2.7E-12 | 25 | 84 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.75E-10 | 26 | 80 | No hit | No description |
CDD | cd14702 | 4.40E-15 | 27 | 78 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 29 | 44 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006971 | Biological Process | hypotonic response | ||||
GO:0009267 | Biological Process | cellular response to starvation | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000693 | Biological Process | positive regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MSSSSLSPAG SSDGDSAGVV VAADHRREKR RLSNRESARR SRLRKQQHLD ELVQEVARLQ 60 ADNARVLARA SEIAGQYARV EQENTVLRAR AAELGDRLRS VNEVLRVVEE FSGVAMDIQE 120 ECPPDDPLLR PWQIPCPAAA HMLQY* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 44 | RRSRLRK |
2 | 38 | 45 | RRSRLRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.69088 | 0.0 | callus| flower| leaf| panicle| root| seed| stem| vegetative meristem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 71061097 | 0.0 | ||||
Expression Atlas | Q4H4C4 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Roots and shoots of young plants, and basal portion of leaves. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May contribute to developmentally specific patterns of gene expression. Binds specifically to ocs elements which are transcriptional enhancer found in the promoters of several plant genes. OCSBF-1 is able to bind to a site within each half of the ocs element as well as to animal AP-1 and CREB sites. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00419 | DAP | Transfer from AT3G62420 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g37410.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g37410 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB185280 | 0.0 | AB185280.1 Oryza sativa Japonica Group OsOBF1 mRNA for bZIP protein, complete cds. | |||
GenBank | AL935072 | 0.0 | AL935072.4 Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619873.1 | 1e-100 | ocs element-binding factor 1 | ||||
Swissprot | P24068 | 2e-77 | OCS1_MAIZE; Ocs element-binding factor 1 | ||||
TrEMBL | A0A0D3HVP5 | 1e-98 | A0A0D3HVP5_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0BU26 | 1e-98 | A0A0E0BU26_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0CHQ3 | 1e-98 | A0A0E0CHQ3_9ORYZ; Uncharacterized protein | ||||
TrEMBL | A0A0E0JB71 | 1e-98 | A0A0E0JB71_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0RIR1 | 1e-98 | A0A0E0RIR1_ORYRU; Uncharacterized protein | ||||
TrEMBL | A2ZLM8 | 1e-98 | A2ZLM8_ORYSI; Uncharacterized protein | ||||
TrEMBL | I1R774 | 1e-98 | I1R774_ORYGL; Uncharacterized protein | ||||
TrEMBL | Q4H4C4 | 1e-98 | Q4H4C4_ORYSJ; BZIP protein | ||||
STRING | OGLUM12G17310.1 | 2e-99 | (Oryza glumipatula) | ||||
STRING | OMERI02G09370.1 | 2e-99 | (Oryza meridionalis) | ||||
STRING | ORUFI12G17520.1 | 2e-99 | (Oryza rufipogon) | ||||
STRING | ONIVA12G14510.1 | 2e-99 | (Oryza nivara) | ||||
STRING | ORGLA11G0215100.1 | 2e-99 | (Oryza glaberrima) | ||||
STRING | ORGLA12G0138000.1 | 2e-99 | (Oryza glaberrima) | ||||
STRING | OBART12G15770.1 | 2e-99 | (Oryza barthii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1886 | 35 | 100 | Representative plant | OGRP551 | 16 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G62420.1 | 1e-35 | basic region/leucine zipper motif 53 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g37410.1 |
Entrez Gene | 9271102 |
Publications ? help Back to Top | |||
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