PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os12g33950.1 | ||||||||
Common Name | OsJ_36303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 110aa MW: 12128.3 Da PI: 10.6294 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 30.8 | 6.8e-10 | 4 | 52 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqkyl 48 +WTt +l+ +a + + ++ +W +ar +g g+t++++k ++ k+l LOC_Os12g33950.1 4 SWTTKQNKLFERALATYDKDtpgRWQNVARAVGGGKTAEEVKRHYDKLL 52 7********************************************9875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 7.3E-8 | 1 | 54 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 10.589 | 1 | 50 | IPR017884 | SANT domain |
SuperFamily | SSF46689 | 3.59E-12 | 3 | 59 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.00E-5 | 4 | 52 | No hit | No description |
Pfam | PF00249 | 3.9E-7 | 4 | 52 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-4 | 4 | 53 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 110 aa Download sequence Send to blast |
MSSSWTTKQN KLFERALATY DKDTPGRWQN VARAVGGGKT AEEVKRHYDK LLQDLHHIES 60 AGRQGSQYGG SSSSKSKGGS SSGEQRYRNR DWKQQPGLHS GAVKRASQY* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-23 | 4 | 89 | 10 | 89 | RADIALIS |
Search in ModeBase |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
Expression Atlas | Q2QPM6 |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os12g33950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os12g33950 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL731738 | 1e-141 | AL731738.6 Oryza sativa chromosome 12, . BAC OSJNBa0005K20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP012527 | 1e-141 | AP012527.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT98C. | |||
GenBank | AP012528 | 1e-141 | AP012528.1 Oryza rufipogon mitochondrial DNA, complete genome, strain: RT102C. | |||
GenBank | AP014968 | 1e-141 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | BX000456 | 1e-141 | BX000456.3 Oryza sativa chromosome 12, . BAC OSJNBa0050D07 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | JF281154 | 1e-141 | JF281154.1 Oryza sativa Indica Group strain WA-CMS mitochondrion, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619271.1 | 4e-56 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-25 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | Q2QPM6 | 2e-73 | Q2QPM6_ORYSJ; Myb-related protein, putative | ||||
STRING | OS12T0522516-00 | 1e-55 | (Oryza sativa) | ||||
STRING | ONIVA02G03520.1 | 2e-52 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75250.1 | 4e-26 | RAD-like 6 |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os12g33950.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|