PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g33090.1
Common NameLOC4352343, Os12g0515500
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 620aa    MW: 64726 Da    PI: 6.447
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g33090.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.22.1e-06218239526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       +C+ f ++  C++Gd C +aHg
  LOC_Os12g33090.1 218 PCPEFKKGAGCRRGDMCEYAHG 239
                       8******88************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.49E-850127IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.202.5E-950136IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029712.48852123IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.44688123IPR002110Ankyrin repeat
PfamPF000230.01991122IPR002110Ankyrin repeat
SMARTSM003569.8E-4213240IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4216240IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.258218241IPR000571Zinc finger, CCCH-type
SMARTSM0035687249272IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.841249273IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 620 aa     Download sequence    Send to blast
MGEPGGAEAA VSARLLELAA DDNAAGLGEL LAAWPSLADE PAPWYTPARG AEPLTPLMVA  60
AVYGSVGCLD ALLSPPYLVD PNRASASSLS TPLHLAAAGG SASAPAAVSR LLAAGADPAL  120
LDHLQRRASD LVALPPNSLP LKNHLLSLLG ARKEWPPDPS LPDIKNGAYA SDDFRMYSFK  180
VRACSRAYSH DWTECPFVHP GENARRRDPR KYHYSCVPCP EFKKGAGCRR GDMCEYAHGV  240
FESWLHPAQY RTRLCKDGVG CARRVCFFAH TPDELRPLYV STGSAVPSPR GALEMAAAAA  300
AMGMGLSSPG SSSFTPPLSP SAGGGGGGGG GSGGGGAWPQ QPSVPALCLP GSAGNLHLSR  360
LRTSLSARDM AVDELLAAAA AAADYDGLVA SPASIRSARG KALVPSNLDE LFSAELAAAA  420
ASRSPRYADQ GGAAFSPTRK ATVLNQFQLQ QQHSLLSPRA AAVTPEPVSP MSSRLLAALA  480
QREKMQQQTL RSMSSRDLGN AASLLVGSPV SSSMSKWGFP SGNPDWGADD EELGRLKRCS  540
SFELRSGAAN GNHEPDLSWV NTLVKEPTPE KMMTTTSAMD SIGILGQNTS RDHIVGGEDD  600
TAGVISSWLE QLQLDEMVV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.809540.0root| seed
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567640670.0
Expression AtlasQ2QPW2-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g33090.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g33090
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7139000.0AL713900.4 Oryza sativa chromosome 12, . BAC OJ1126_F07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620786.10.0zinc finger CCCH domain-containing protein 67
SwissprotQ2QPW20.0C3H67_ORYSJ; Zinc finger CCCH domain-containing protein 67
TrEMBLA0A0E0RHX50.0A0A0E0RHX5_ORYRU; Uncharacterized protein
STRINGOS12T0515500-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-127CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Wang D, et al.
    Genome-wide analysis of CCCH zinc finger family in Arabidopsis and rice.
    BMC Genomics, 2008. 9: p. 44
    [PMID:18221561]