PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g32400.1 | ||||||||
Common Name | LOC107276670, OsJ_36241 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | bHLH | ||||||||
Protein Properties | Length: 199aa MW: 22598.2 Da PI: 4.6037 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.6 | 1.4e-10 | 124 | 163 | 10 | 54 |
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++RR+riN+++ L+el+P+ +K++ +++Le+A++Y+k L LOC_Os12g32400.1 124 KNRRQRINERLRILQELIPNG-----TKVDISTMLEEAIQYVKFL 163 89*****************97.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.615 | 114 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-13 | 117 | 178 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.8E-11 | 118 | 174 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.2E-9 | 120 | 169 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.00E-10 | 123 | 168 | No hit | No description |
Pfam | PF00010 | 9.1E-8 | 124 | 163 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 199 aa Download sequence Send to blast |
MECSSFEAIC NESEMIAHLQ SLFWSSSDAD PCFGSSSFSL ISSEGYDTMT TEFVNSSTNV 60 CFDYQDDSFV SAEETTIGNK RKVQMDTENE LMTNRSKEVR TKMSVSKACK HSVSAESSQS 120 YYAKNRRQRI NERLRILQEL IPNGTKVDIS TMLEEAIQYV KFLHLQIKLL SSDEMWMYAP 180 LAFDSGNNRL YQNSLSQE* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QQ32 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g32400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g32400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731759 | 1e-175 | AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 1e-175 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 1e-175 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619477.2 | 1e-145 | transcription factor SPATULA isoform X1 | ||||
Swissprot | Q3E7L7 | 7e-34 | BH139_ARATH; Transcription factor bHLH139 | ||||
TrEMBL | A0A0E0RHR4 | 1e-145 | A0A0E0RHR4_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QQ32 | 1e-145 | Q2QQ32_ORYSJ; Helix-loop-helix DNA-binding domain containing protein | ||||
STRING | ORUFI12G14590.1 | 1e-146 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP14508 | 21 | 23 | Representative plant | OGRP1048 | 14 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43175.1 | 4e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g32400.1 |
Entrez Gene | 107276670 |
Publications ? help Back to Top | |||
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