PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g32250.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | WRKY | ||||||||
Protein Properties | Length: 541aa MW: 57760.2 Da PI: 7.4023 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 100.4 | 1.1e-31 | 270 | 326 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+ LOC_Os12g32250.1 270 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 326 8**************************************99.***************8 PP | |||||||
2 | WRKY | 107 | 9.7e-34 | 426 | 484 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe LOC_Os12g32250.1 426 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 484 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.7E-28 | 266 | 328 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.88E-25 | 268 | 328 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.5E-34 | 269 | 327 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 270 | 326 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 23.192 | 270 | 328 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.2E-36 | 412 | 486 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-29 | 418 | 486 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 37.413 | 421 | 486 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-39 | 426 | 485 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.2E-26 | 427 | 484 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 541 aa Download sequence Send to blast |
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGGGGVMTSS 60 SSSAAGATSF TQLLIGNLSA PPPPPPPPQQ QQQREAARGG GVARAGPALS VAPPPTAGSV 120 FTVPPGLSPS GLLDSPGLLF SPAMFDAFDV LDMFIPDKIL PKRATRIKLD IYFVKTSPEG 180 GFGMSHREAL AQVTAQASHS PLRMFDHTEQ PSFSAAPTSS EAMQHMNAAV NMTGISDMVM 240 GPTNNENVAF QPAEASQRYQ VNAPVDKPAD DGYNWRKYGQ KVVKGSDCPR SYYKCTHPNC 300 PVKKKVEHAE DGQISEIIYK GKHNHQRPPN KRAKDGSSSA ADQNEQSNDT VSGLSGIKRD 360 QEAIYGMSEQ LSGLSEGDDM DDGESRPHEA DDKESDSKKR NIQISSQRTS AEAKIIVQTT 420 SEVDLLDDGY RWRKYGQKVV KGNPHPRSYY KCTYAGCNVR KHIERASSDP KAVITTYEGK 480 HNHEPPVGRG NNQNAGNAAP SSSAQQNMQN LSSNQASLTM ADFNNINQRP IGVLQFKSEE 540 * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-38 | 260 | 486 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 2e-38 | 260 | 486 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.17759 | 0.0 | flower| leaf| panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QQ47 |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00260 | DAP | Transfer from AT2G03340 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g32250.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g32250 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL731759 | 0.0 | AL731759.2 Oryza sativa chromosome 12, . BAC OSJNBa0009K11 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620542.1 | 0.0 | probable WRKY transcription factor 3 | ||||
TrEMBL | Q2QQ47 | 0.0 | Q2QQ47_ORYSJ; WRKY DNA binding domain containing protein, expressed | ||||
STRING | ORUFI12G14460.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1345 | 38 | 122 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03340.1 | 1e-105 | WRKY DNA-binding protein 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g32250.1 |
Publications ? help Back to Top | |||
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