PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g32140.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 745aa MW: 85795.8 Da PI: 6.8637 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 58.2 | 2.7e-18 | 88 | 166 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fYn+YAk+ GFsvrk+ +fvCskeg r+++ k ++++rr+ra tr++C a+l +k++k +g w v+++ +HnH+l+ LOC_Os12g32140.1 88 NFYNSYAKRKGFSVRKE-------------LRFVCSKEGIRDPSLVKpEDRARRERALTRMECAASLSIKLDKkRGIWFVDNFIDDHNHPLT 166 6*************986.............58***********9877688999*******************99****************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 7.4E-15 | 88 | 166 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 4.7E-32 | 288 | 379 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.559 | 455 | 505 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.8E-7 | 479 | 504 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 1.2E-4 | 480 | 507 | IPR006564 | Zinc finger, PMZ-type |
SuperFamily | SSF57756 | 6.02E-5 | 617 | 655 | IPR001878 | Zinc finger, CCHC-type |
PROSITE profile | PS50158 | 8.614 | 634 | 649 | IPR001878 | Zinc finger, CCHC-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 745 aa Download sequence Send to blast |
MGEFRGTGNK DDAKCGKDCS TDSYMDNSSN TNDDDYAECS LGDHNKSQPN DPSSSHNVFH 60 SVEEDNVALD EYWNIVQMNF QTEDECYNFY NSYAKRKGFS VRKELRFVCS KEGIRDPSLV 120 KPEDRARRER ALTRMECAAS LSIKLDKKRG IWFVDNFIDD HNHPLTSHDE TPFLRSHRKI 180 KDFQKSEIHS LESIGIRKNV IMKVMKCKYG GYDKVGFVKK DLYNYSSRYK RSRILEGDAS 240 ATLELMKKRR DKDPGFFYEY QVDDEGRLKN LFWCDAQSRM DYQSFGDVVF DSTQRMNKYN 300 MPFIPFVGLN HHRQTTIFAC GIVSDECVES YTWFLQVFLR AMCQQKPRSI ITDSDNAMMK 360 AIRQVLPDTD HRVCSWHIER VEHYEVCVSE LREKEAEFDS KASQSWPATI TDSPEIEESA 420 GHIFTSANFD LVQKELQKLD GLHVDVVQDG KGERYMVTSE QKSARKCYVD YTRIGGNHDI 480 RCSCRKMERE GIPCKHILSV LKHLEVKVKE IPKCCVLQRL SKNAKADLPS VRKSDLHVWT 540 EKQKNYYELN ARGSELFDLA SNSCELFGEV KEYMESQLSK ISSSNAATKK HTHVDEVGET 600 SHRPEGSVLD PICVATKGAP RSMKGWDEHR PRLCSRCRQP GHDIRRCPEA KREEQDLALI 660 ESLKIVVILY DINLHCLETL RVKDEELQNL ANNIRAQDAT IKEIADKLTQ TAEAAEAAAS 720 AAHTMDEHRI LLCSEIERLR HYKQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 246 | 251 | KKRRDK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.83184 | 1e-163 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QQ59 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g32140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g32140 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL954828 | 0.0 | AL954828.3 Oryza sativa chromosome 12, . BAC OSJNBa0022M02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619261.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | Q2QQ59 | 0.0 | Q2QQ59_ORYSJ; Transposon protein, putative, unclassified |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP18 | 32 | 967 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-70 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g32140.1 |
Publications ? help Back to Top | |||
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