PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g29330.1 | ||||||||
Common Name | LOC4352203, Os12g0477400, OSNPB_120477400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 261aa MW: 28012.5 Da PI: 9.9389 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 144.6 | 5.4e-45 | 9 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdL.pkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF+Ptdeelvv+yL++++ g++l+ + i++v+++ ++P+dL p +e+e yfF++++ ky +g+r+nrat +gyWkatgk+k+v LOC_Os12g29330.1 9 LPPGFRFRPTDEELVVHYLRRRALGSPLPPAVDIPDVRLLAHDPSDLlP--PGWSEQERYFFTCKEAKYVKGRRANRATGAGYWKATGKEKPV 99 79*************************998556**************43..3447899*********************************** PP NAM 93 lsk.........kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +vg+k++Lvfy+g+ p+g+ktdWvmheyrl LOC_Os12g29330.1 100 AVSvaaaprsqaAAVVVGMKRSLVFYRGKPPTGKKTDWVMHEYRL 144 *987777765444445***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-49 | 5 | 176 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.908 | 9 | 176 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.9E-27 | 10 | 144 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020104 | anatomy | leaf sheath |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
METTAAKKLP PGFRFRPTDE ELVVHYLRRR ALGSPLPPAV DIPDVRLLAH DPSDLLPPGW 60 SEQERYFFTC KEAKYVKGRR ANRATGAGYW KATGKEKPVA VSVAAAPRSQ AAAVVVGMKR 120 SLVFYRGKPP TGKKTDWVMH EYRLAGAGLA PCRRAATADH PARPAEGWVL CRVFRKKGSA 180 AASTASPTAD ADDDDATTER ADDAAAGVRF IDFFARADAR RRRAASPVSS SCVTDASAEH 240 CREQETTSRN GGAAAGDASD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 6e-39 | 2 | 179 | 8 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23110 | 0.0 | callus| leaf| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 116012609 | 0.0 | ||||
Expression Atlas | Q2QQZ6 | - |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g29330.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g29330 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK243244 | 0.0 | AK243244.1 Oryza sativa Japonica Group cDNA, clone: J100046N20, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618303.1 | 0.0 | NAC domain-containing protein 83 | ||||
Swissprot | Q9FY93 | 3e-52 | NAC83_ARATH; NAC domain-containing protein 83 | ||||
TrEMBL | A0A0E0JA85 | 0.0 | A0A0E0JA85_ORYNI; Uncharacterized protein | ||||
TrEMBL | A0A0E0QXV4 | 0.0 | A0A0E0QXV4_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QQZ6 | 0.0 | Q2QQZ6_ORYSJ; No apical meristem protein, expressed | ||||
STRING | ORUFI10G07040.1 | 0.0 | (Oryza rufipogon) | ||||
STRING | OS12T0477400-01 | 0.0 | (Oryza sativa) | ||||
STRING | ONIVA12G11920.1 | 0.0 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6317 | 32 | 54 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13180.1 | 3e-50 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g29330.1 |
Entrez Gene | 4352203 |
Publications ? help Back to Top | |||
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