PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g24400.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 707aa MW: 81627.1 Da PI: 5.0998 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 45.9 | 1.9e-14 | 289 | 339 | 1 | 48 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...t 48 +fYn YA++vGFs++k+++++s++++ +t++tf+C+++ k+++ k+k + LOC_Os12g24400.1 289 DFYNGYAYMVGFSTCKASNYHSRKTDVVTRHTFKCNRWRKPSDPKEKdlpE 339 6****************************************9998885552 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.0E-12 | 289 | 341 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.916 | 544 | 580 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 8.9E-5 | 551 | 580 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 9.1E-6 | 555 | 582 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 707 aa Download sequence Send to blast |
MGALSSCKCH YIVQKKGCNA IFFIYPNVQG TEAESNEDYG MLFRLSQEGG ITYTNLIQQV 60 SVSPNAILPS AEVAGGLPLL QNTYGSFMQL LQAPIESESA LYLTSNRFEY DNTFWGFDPH 120 NGYQQNDLQN AQTDTSQMCN SLPQSVAVHP PMASLDMLYD EMQKSSADVD NQAEMCRPTV 180 QLKASSVEVI YNEMQTQTIE ADACFDQHFE QATEEDLLSD HAIVTFQQVE EIEQDKSAEN 240 PDQNFSEEDI NIFLENESVA VVQRGGQDAK SAHVPSINKV FADENEAFDF YNGYAYMVGF 300 STCKASNYHS RKTDVVTRHT FKCNRWRKPS DPKEKDLPEV DEVENCLQTN TTNPLCLDFF 360 EKKRSEDPLF YFRFRTDENN VVKSLFWSDG NSRKFYEMFG DIVSFDMTYK TNRYFQLMWV 420 TRKRWAPVYF KSNWCPLIQT TARSEGTNSS VSAFLAQYER IAETIYECFK EQESLTRNTV 480 LDTWSEYQFE KQATKLYTRK IFWAFQRILQ SYTKYDVTVK VRDSIFEVYK SEIHELQDFR 540 KRKYIVVVDT ISEEYECICS RFKKDGILCV HVLKVLIHLN ITKLPEKYFI ERWRLKDKNQ 600 ELSVPNTLMS ATVLECNPLL RFNILSQKMI KLASDASKTK QKFIYVMNES DKIEDGLKAM 660 SDTAPNEATV HVQDAAAMSR PKNLKYINCC LIGIFRNYFK SLQAKP* |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QSE4 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g24400.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g24400 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL928747 | 0.0 | AL928747.3 Oryza sativa chromosome 12, . BAC OSJNBa0017A21 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642362.1 | 0.0 | protein FAR1-RELATED SEQUENCE 7-like | ||||
TrEMBL | Q2QSE4 | 0.0 | Q2QSE4_ORYSJ; Transposon protein, putative, unclassified |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP22001 | 3 | 5 | Representative plant | OGRP30 | 12 | 351 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-16 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g24400.1 |
Publications ? help Back to Top | |||
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