PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g22940.1
Common NameLOC107275392, Os12g0418300, OsJ_35881, OSNPB_120418300
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 418aa    MW: 44398.2 Da    PI: 5.8881
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g22940.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM65.12.1e-20111352128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                         GfrF+P+ e++v++yL   v+g++  ++e +i+++d+y + eP+dL  k    +++++ + +fF+  ++ +    + +r++  g+W ++ +
  LOC_Os12g22940.1  11 ELGFRFNPSPEQVVTYYLPCLVAGQQpKDTEGCIHSADVYGAdEPRDLAgKyapVARSSNGDRFFFTGCKRMKG---KFSRSAGGGTWVSQSS 100
                       57**********************994445556*******9869****843554334455588****9999764...7999999*****8866 PP

               NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        k++++++g ++g  k + f     ++g++tdW+m+ey+l
  LOC_Os12g22940.1 101 -KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135
                       .888888*************7....78899********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-219154IPR003441NAC domain
PROSITE profilePS5100523.84610154IPR003441NAC domain
PfamPF023658.9E-1413135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG  60
KYAPVARSSN GDRFFFTGCK RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVAHQESAVL QPQEPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV  240
RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GGHHTPQPSV  300
PVPATPEQGF SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV  360
ELAKVLEDGL QGGGGRQWQS TAVCDSSSSA TGILARHGAT AASSTHPDLS QGSVRAQ*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QSU1
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g22940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g22940
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7317850.0AL731785.2 Oryza sativa chromosome 12, . BAC OSJNBa0037L20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAL7318830.0AL731883.4 Oryza sativa chromosome 12, . BAC OSJNBa0024B03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619211.20.0uncharacterized protein LOC107275392
TrEMBLQ2QSU10.0Q2QSU1_ORYSJ; No apical meristem protein
STRINGOMERI12G11020.10.0(Oryza meridionalis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18322799
Representative plantOGRP9262314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10490.13e-12NAC domain containing protein 52
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]