PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g22630.1 | ||||||||
Common Name | LOC107275475, Os12g0415000, OSNPB_120415000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 471aa MW: 50829.5 Da PI: 5.0387 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.8 | 7.5e-22 | 10 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 GfrF+P+ ee+v++yL + ++g++ + +e i+++++y +eP++L + +++++ + +f ++ ++ + + +r++ g W ++ + LOC_Os12g22630.1 10 ELGFRFNPSPEEVVTYYLPRLIAGHPPKDTEScIHRANVYGAEPRELAAqfapVARSSNGDRFFLTECKRIK---GKVSRVAGGGSWVSQTS- 98 57***********************95554444**************8435543333333556666665543...5899999*****98765. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++++g +vg k + f ++g++tdW+m+ey+l LOC_Os12g22630.1 99 KDIKNREGIKVGEAKNFRFK----KDGTNTDWLMEEYHL 133 999999*************7....78999********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.24E-22 | 7 | 151 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 25.178 | 9 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.7E-13 | 12 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 471 aa Download sequence Send to blast |
MATNLHLLLE LGFRFNPSPE EVVTYYLPRL IAGHPPKDTE SCIHRANVYG AEPRELAAQF 60 APVARSSNGD RFFLTECKRI KGKVSRVAGG GSWVSQTSKD IKNREGIKVG EAKNFRFKKD 120 GTNTDWLMEE YHLCLRQASD LEPVLCRVYV SPRAAKDSAA HQESAALTPQ EPAPPLAHAP 180 APAPIQEPAA LPRQELAPAP PRLEAVITQQ QATMKMGGSV PASKATRQSC VTASAPPPRR 240 VAPQPAPPSL RTAPAAVAPP RQVPVITQQQ APPLKRPAPP VPSPPCAKKI RGPVSASPAA 300 RQSCVAASAP PPWCVPPPPR PAPPSRRVMA PLPPYPMDPF ETPPSPHAPR HDPFEPPPSP 360 DPPIQSYAID PPIQSYAMDP FEQPPSPYAP HGVDDMDEFT RSLEAQLEEA DGDEIAAATV 420 APPMAQNVAP DDDMDEFTRS LEAQLEEADG DDKIDDDEID EEIFQIPLKD * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | |||||
Expression Atlas | Q2QSX2 |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g22630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g22630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL844879 | 0.0 | AL844879.5 Oryza sativa chromosome 12, . BAC OSJNBa0036H15 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619209.1 | 0.0 | proteoglycan 4 | ||||
TrEMBL | A0A0E0RGF4 | 0.0 | A0A0E0RGF4_ORYRU; Uncharacterized protein | ||||
TrEMBL | Q2QSX2 | 0.0 | Q2QSX2_ORYSJ; No apical meristem protein | ||||
STRING | ORUFI12G10750.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1832 | 27 | 99 | Representative plant | OGRP9262 | 3 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04400.1 | 2e-13 | NAC domain containing protein 77 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g22630.1 |
Entrez Gene | 107275475 |
Publications ? help Back to Top | |||
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