PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g18910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 534aa MW: 61290.1 Da PI: 8.1932 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 36.3 | 1.9e-11 | 110 | 179 | 2 | 78 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwev 78 fYn+Y +++GF+vrks+s+ r+ +Cskegk++ + ++ +k++r+r + r+gC+a ++v++ +g+ + LOC_Os12g18910.1 110 FYNKYVEHAGFNVRKSRSRAA-------YREICCSKEGKNKYRGDE-TKRERRRGSARIGCRAYVRVRNVViEGEVAL 179 9***************98877.......7899************99.9999999*************98776665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.1E-7 | 110 | 176 | IPR004330 | FAR1 DNA binding domain |
PROSITE profile | PS50966 | 9.174 | 389 | 425 | IPR007527 | Zinc finger, SWIM-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MASGGEDPGP SDVRSHVPAL VADRSHLMQG NDVRLHDDVQ RGGLQQLGGG DGGGDTGSES 60 TRTDRPPCVD DAHMRMPTRN VMHIHGAHVP DEMVPKFGME FKSYEMAYAF YNKYVEHAGF 120 NVRKSRSRAA YREICCSKEG KNKYRGDETK RERRRGSARI GCRAYVRVRN VVIEGEVALT 180 ITYNQHCLDV PCFEMKGLNH LSGYLRRSRI AWETALHHVA FLQTYTPIEF EYAWKEFIDK 240 FGLHDSTELR DLYDIRHRWV PAFFKEDYCG HMTSTQRSES FNRLVKSSFV DHQTALHRFA 300 RRILEVVLSR KEKEAAETRA CQDVPNVKTA WPFAEQLSRV YTRAVFKVFE NTLDESVHFR 360 IEQYGVDQTQ WIISHSKRSE KHDWCQRQFK VTADVVNGQF ICECMQWEHT GLFCPHLLRA 420 FVHVQVEKIP HTYVLRRYSR EAKSDVNFDR RDRPIAGLDG VKLSNRTKVL SLDAQQLVKW 480 GRRSSVAFER ATSVMKGLRN QLEEIPADVH GLDADDGVSE HEVEVGDGAR PSI* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.78825 | 1e-127 | panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 115468075 | 1e-127 | ||||
Expression Atlas | Q2QTQ0 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g18910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g18910 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL844875 | 0.0 | AL844875.4 Oryza sativa chromosome 12, . BAC OSJNBb0032I14 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015642312.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q2QTQ0 | 0.0 | Q2QTQ0_ORYSJ; Transposon protein, putative, unclassified | ||||
STRING | OS07T0664100-00 | 1e-158 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6497 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-25 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g18910.1 |
Publications ? help Back to Top | |||
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