PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g13570.1 | ||||||||
Common Name | Os12g0238000, OSNPB_120238000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | MYB | ||||||||
Protein Properties | Length: 846aa MW: 93326.6 Da PI: 4.9739 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.3 | 8.2e-19 | 55 | 101 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l +av+ + g++Wk+Ia++++ Rt+ qc +rwqk+l LOC_Os12g13570.1 55 KGNWTPEEDSILSRAVQTYKGKNWKKIAECFP-DRTDVQCLHRWQKVL 101 79******************************.************986 PP | |||||||
2 | Myb_DNA-binding | 60.2 | 4.5e-19 | 107 | 153 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+++v+ v++lG++ W+tIa+ ++ gR +kqc++rw+++l LOC_Os12g13570.1 107 KGPWSKEEDDIIVQMVNKLGPKKWSTIAQALP-GRIGKQCRERWHNHL 153 79******************************.*************97 PP | |||||||
3 | Myb_DNA-binding | 47.5 | 4.2e-15 | 159 | 201 | 1 | 45 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT+eE+ l++a++++G++ W+ + ++ gRt++ +k++w+ LOC_Os12g13570.1 159 KEAWTQEEEITLIHAHRMYGNK-WAELTKFLP-GRTDNAIKNHWN 201 579*******************.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.103 | 50 | 101 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.52E-19 | 53 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.5E-17 | 54 | 103 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-16 | 55 | 101 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-24 | 57 | 118 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.54E-15 | 57 | 101 | No hit | No description |
PROSITE profile | PS51294 | 31.404 | 102 | 157 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.22E-30 | 104 | 200 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.2E-17 | 106 | 155 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-17 | 107 | 153 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.02E-15 | 109 | 153 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 5.1E-26 | 119 | 160 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.4E-14 | 158 | 206 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 19.654 | 158 | 208 | IPR017930 | Myb domain |
Pfam | PF00249 | 1.6E-13 | 159 | 202 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.6E-21 | 161 | 208 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.69E-11 | 161 | 201 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009049 | anatomy | inflorescence | ||||
PO:0001083 | developmental stage | inflorescence development stage | ||||
PO:0007006 | developmental stage | IL.00 inflorescence just visible stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MSSVMMTSDN GKAPEKGGEA SGPSSAPQEG EISNEPQRRR PLSGRTTGPT RRSTKGNWTP 60 EEDSILSRAV QTYKGKNWKK IAECFPDRTD VQCLHRWQKV LNPELVKGPW SKEEDDIIVQ 120 MVNKLGPKKW STIAQALPGR IGKQCRERWH NHLNPGINKE AWTQEEEITL IHAHRMYGNK 180 WAELTKFLPG RTDNAIKNHW NSSVKKKVDS YMSSGLLTQV SCLPLNEYSA HCNSSPALTQ 240 QNSEDSGSYA VREVENSSVC SQSSLAKVSC SQVHNANVAL GCDLQVNANV DNNEAHDSQS 300 SVGHEACYTS VGAVATAIPE VHYHVSSSNF DPDQHLQEEF AQGLNLHMSM DEVPSNSSFA 360 DNPTICSIEN HERSLEPYDV AMEMPLSMLP SDSGAEQKLH FMSEADFNSP NCLKSELWQD 420 ISLQSLLSGP DAVETDSFSR SNHQSDVYSS QADNEFLAPP YLLQTSNSSS VMEATYGQSP 480 QMSVPPSLIC SNVMTDVPSD NRSEPKEMTV SQAEMVTQSS SSSGDAEMSA NPGSSNGSDI 540 PSMMERIPEC ADQHVTNAEE PEASIEKEPS VTPSATADEK QDEGALFYEP PRFPSMDVPF 600 VSCDLVTSGD LQEYSPLGIR QLMRSTMNVC TPMRLWGSPT HDESPDILLK SAAKSFICTP 660 SILKKRHRDL VSPIPDKRIE KKSGTEKDCG VSDTSSIGIQ TCFINATKDD AVITKSVLRI 720 ERSASSKPLE KKLEFSDENK ENLDNTIEQA KDGQSAGNYK HIDEQARGER RTATNITTTY 780 DDLPGNLQPA GILIEHNGDD LVSPDYGKNT MNRSKTQIWN LCQSVRRECL LKSLRNLLWR 840 NLQHA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h88_C | 1e-65 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 1e-65 | 55 | 208 | 6 | 159 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.23747 | 0.0 | callus| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 56382759 | 0.0 | ||||
Expression Atlas | A0A0P0Y8F4 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g13570.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g13570 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ430051 | 0.0 | AJ430051.1 Oryza sativa mRNA for transcription factor myb (myb3R1 gene). |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025878027.1 | 0.0 | LOW QUALITY PROTEIN: transcription factor MYB3R-4-like | ||||
TrEMBL | A0A0P0Y8F4 | 0.0 | A0A0P0Y8F4_ORYSJ; Os12g0238000 protein | ||||
STRING | OS12T0238000-00 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2495 | 38 | 79 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G32730.1 | 1e-95 | Homeodomain-like protein |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g13570.1 |