PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g13170.1
Common NameLOC4351839, Os12g0233800, OsJ_35659
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 392aa    MW: 41548.5 Da    PI: 7.3902
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g13170.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.97.9e-22294356163
                       XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                       e+elkr+rrkq+NRe+ArrsR+RK+ae+eeL++++++L++eN++L++e+++++ke+++l s++
  LOC_Os12g13170.1 294 ERELKRQRRKQSNRESARRSRLRKQAECEELAQRAEVLKQENTSLRDEVNRIRKEYDELLSKN 356
                       89**********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-28199IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165961.6E-39143268No hitNo description
Gene3DG3DSA:1.20.5.1705.0E-17288353No hitNo description
SMARTSM003381.7E-21294358IPR004827Basic-leucine zipper domain
PfamPF001708.6E-21294356IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.415296359IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.81E-11297353No hitNo description
CDDcd147023.05E-23299350No hitNo description
PROSITE patternPS000360301316IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0020048anatomymicrospore
PO:0001009developmental stageD pollen mother cell meiosis stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MGSSGADAPT KTSKASAPQE QQPPASSSTA TPAVYPDWAN FQQGYPPIPP HGFFPSPVAS  60
SPQGHPYMWG AQPMIPPYGT PPPPYVMYPP GVYAHPSMPP GAHPFTPYAM ASPNGNADPT  120
GTTTTAAAAA AGETDGKSSE GKEKSPIKRS KGSLGSLNMI TGKNSTEHGK TSGASANGAI  180
SQSGESGSES SSEGSEANSQ NDSHHKESGQ EQDGEVRSSQ NGVSRSPSQA KLNQTMAIMP  240
MTSSGPVPAP TTNLNIGMDY WANTASSTPA IHGKATPTAA PGSMVPGEQW VQDERELKRQ  300
RRKQSNRESA RRSRLRKQAE CEELAQRAEV LKQENTSLRD EVNRIRKEYD ELLSKNSSLK  360
EKLEDKQHKT DEAGVDNKLQ HSGDDSQKKG N*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1310316RRSRLRK
2310317RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.22340.0callus| flower| leaf| panicle| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329757850.0
Expression AtlasQ2QVD7-
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in roots and at lower levels in stems and leaves. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in responses to fungal pathogen infection and abiotic stresses. {ECO:0000269|Ref.1}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00291DAPTransfer from AT2G35530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g13170.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced during incompatible interaction with the fungal pathogen Puccinia striiformis (Ref.1). Induced by abscisic acid (ABA), ethylene, cold stress, salt stress and wounding (Ref.1). {ECO:0000269|Ref.1}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g13170
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankOSU042950.0U04295.1 Oryza sativa Nipponbare bZIP DNA-binding factor (osZIP-1a) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619717.10.0bZIP transcription factor 68 isoform X1
SwissprotB6E1070.0BZP1B_WHEAT; bZIP transcription factor 1-B
TrEMBLQ2QVD70.0Q2QVD7_ORYSJ; BZIP transcription factor family protein, expressed
TrEMBLQ406250.0Q40625_ORYSA; DNA-binding factor of bZIP class
STRINGORGLA12G0063500.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP21473796
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32150.19e-92basic region/leucine zipper transcription factor 68
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  2. Appels R, et al.
    Shifting the limits in wheat research and breeding using a fully annotated reference genome.
    Science, 2018.
    [PMID:30115783]
  3. Nantel A,Quatrano RS
    Characterization of three rice basic/leucine zipper factors, including two inhibitors of EmBP-1 DNA binding activity.
    J. Biol. Chem., 1996. 271(49): p. 31296-305
    [PMID:8940135]