PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g12380.2 | ||||||||
Common Name | LOC4351811, Os12g0225300, OSNPB_120225300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | FAR1 | ||||||||
Protein Properties | Length: 715aa MW: 80926 Da PI: 5.4989 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 77 | 3.6e-24 | 97 | 187 | 2 | 89 |
FAR1 2 fYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 fYneYA+ +GF r+ +s++s +++ +++++fvCs+eg +++++ + + +++r+ra+ r gC+a+++v ++ +++w+v+kle+ HnH+l LOC_Os12g12380.2 97 FYNEYARWLGFPFRVGRSRRSkGMEEVVIMKRFVCSREGAHKKKQPStsgEATSKRERASMREGCNAMMEVVRD-KDHWVVSKLEKAHNHSL 187 9*******************944567789***********9999888787888999***************999.9**************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.6E-21 | 97 | 187 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 6.1E-28 | 280 | 371 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.979 | 560 | 596 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.5E-8 | 563 | 593 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0012 | 571 | 598 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0000032 | anatomy | tetrad of microspores | ||||
PO:0001029 | developmental stage | E tetrad stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 715 aa Download sequence Send to blast |
MEDDERGDGD ELIADYVDCL MSLDTNSRSC QNDALILEGA PDDVDDDAAA AAAAAAEQDV 60 MRDFAPGDGD GDADAENDPK EPVLGMTFES DEAAKMFYNE YARWLGFPFR VGRSRRSKGM 120 EEVVIMKRFV CSREGAHKKK QPSTSGEATS KRERASMREG CNAMMEVVRD KDHWVVSKLE 180 KAHNHSLGIG TRYGYLRARG LPDVSNKIAA MGSDGTASLR QNFLGETGDG QGLLDYLKKK 240 QANDPRCSHA IQVDKNGCLM NVFWADSRAK EAYRHFGDAV TFDTSYKKTK YMMPFVTFSG 300 VNHHLQTVIF GCAFLMEETE SSFSWLFETW LAAMGGKAPG SLVTDQNRAM KAAIGKVFPD 360 TCHRFCKWYI LSRTKQKLCH AYSEHPDLRD EIESCVIESE TISTFETSWM SILEKYDLRK 420 HAWLQAIYNI RQKWVPLYMM GTFFAEISPT QKLETMNDFY KKYFNTKTTL EVFLNQFDST 480 MTSRYENEAQ ADIDTRLNEA TTRTASPIEK QAASTYTKAV FSRFQEEFTE SLGYIIQKTE 540 EGRVNKFSIT KDEDDPSDTF CVTYNASSKM AKCSCKYFKF SGILCRHILG VFIIVDPRTL 600 PPDYFLKRWT RNARHDELLE DNSNNHKDAT CQSITSRYNV LCADAIRCAD KGSASKAVYK 660 AAKDILQKAY EEIIAYERNP GRGLQRDAIN INEDITIDDT MNDQSLPDFW TKGT* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.50562 | 0.0 | callus| leaf| panicle| stem |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 37991476 | 0.0 | ||||
Expression Atlas | Q0IPB9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g12380.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g12380 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK065655 | 0.0 | AK065655.1 Oryza sativa Japonica Group cDNA clone:J013037J06, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015620344.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | Q0IPB9 | 0.0 | Q0IPB9_ORYSJ; Os12g0225300 protein | ||||
STRING | OS12T0225300-01 | 0.0 | (Oryza sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-146 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g12380.2 |
Entrez Gene | 4351811 |
Publications ? help Back to Top | |||
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