PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g10660.1 | ||||||||
Common Name | LOC4351769, Os12g0209200, OSNPB_120209200 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | DBB | ||||||||
Protein Properties | Length: 211aa MW: 21629.8 Da PI: 4.8508 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.6 | 4.7e-07 | 5 | 46 | 6 | 41 |
zf-B_box 6 CpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+ +e+ e+ C ++ lC+ C + H+ Ht+v LOC_Os12g10660.1 5 CDACEQAEAAVLCCADEAALCRRCDAAVHSAnrlagkHTRVA 46 *****************************6688999999876 PP | |||||||
2 | zf-B_box | 25.7 | 2.3e-08 | 64 | 99 | 4 | 37 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37 ++C+ ++ek +fC +++ llC++C ++ H H LOC_Os12g10660.1 64 PTCDICQEKTGYFFCLEDRALLCRSCDVAVHTAtaH 99 79****************************955663 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.783 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 3.2E-8 | 5 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 5.36E-6 | 5 | 47 | No hit | No description |
Pfam | PF00643 | 2.4E-5 | 5 | 46 | IPR000315 | B-box-type zinc finger |
Gene3D | G3DSA:3.30.40.10 | 2.1E-4 | 53 | 96 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
SMART | SM00336 | 2.7E-11 | 61 | 108 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.257 | 61 | 108 | IPR000315 | B-box-type zinc finger |
Pfam | PF00643 | 2.0E-6 | 64 | 99 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 4.32E-5 | 66 | 90 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009640 | Biological Process | photomorphogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0000989 | Molecular Function | transcription factor activity, transcription factor binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0020039 | anatomy | leaf lamina |
Sequence ? help Back to Top |
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Protein Sequence Length: 211 aa Download sequence Send to blast |
MKIGCDACEQ AEAAVLCCAD EAALCRRCDA AVHSANRLAG KHTRVALLLP SSSSAAAGDD 60 DHHPTCDICQ EKTGYFFCLE DRALLCRSCD VAVHTATAHA AAHRRFLITG VRIGGSVDAA 120 AAADVIVSPT SSSIAPAGSA SSNHAGAAGN NNGRSPAPVR FSGGDGGVEP EQQWPWSDVF 180 AADDDDDVSA AMEQCYYHGI SEPHSSSLTG * |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32977838 | 0.0 | ||||
Expression Atlas | Q2QW41 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g10660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g10660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK067820 | 0.0 | AK067820.1 Oryza sativa Japonica Group cDNA clone:J013117D12, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618519.1 | 1e-151 | B-box zinc finger protein 23 | ||||
TrEMBL | Q2QW41 | 1e-150 | Q2QW41_ORYSJ; Os12g0209200 protein | ||||
STRING | OS12T0209200-01 | 1e-151 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12151 | 25 | 28 | Representative plant | OGRP1804 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G78600.1 | 8e-34 | light-regulated zinc finger protein 1 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g10660.1 |
Entrez Gene | 4351769 |
Publications ? help Back to Top | |||
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