PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g10630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | ZF-HD | ||||||||
Protein Properties | Length: 295aa MW: 31317.5 Da PI: 9.3545 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 98.5 | 4.8e-31 | 71 | 126 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAa++Gg a+DGCgEfmp geeg+ +al+C+ACgCHRnFHR+e + LOC_Os12g10630.1 71 AARYRECLKNHAAAIGGSATDGCGEFMPG-GEEGSLDALRCSACGCHRNFHRKELDA 126 689*************************9.999********************9875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 7.2E-28 | 72 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 73 | 125 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.2E-29 | 73 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.524 | 74 | 123 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-21 | 180 | 242 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.73E-11 | 183 | 242 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 7.6E-20 | 193 | 242 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence Send to blast |
MDLSGAQGEL PLPMHAAASP YLGLHHDHHH HHGGGGGGGG MNGRHMSPPT PPAAAEESKA 60 VVVVSSSATA AARYRECLKN HAAAIGGSAT DGCGEFMPGG EEGSLDALRC SACGCHRNFH 120 RKELDAAAAP PLHHHHHQLL GVGAHPRGHG HHHHHLLVAA LPPPTRMVMP LSAMHTSESD 180 DAAARPGGGA AARKRFRTKF TAEQKARMLG FAEEVGWRLQ KLEDAVVQRF CQEVGVKRRV 240 LKYGSGAPEE LKKLDFFWER RGGGGGNPLR NKMKIHLASA STSIRLQLSP TETL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh5_A | 2e-17 | 193 | 242 | 17 | 66 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g10630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g10630 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL954853 | 0.0 | AL954853.5 Oryza sativa chromosome 12, . BAC OSJNBb0071I17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618832.1 | 1e-173 | zinc-finger homeodomain protein 3 | ||||
Swissprot | Q2QW44 | 1e-174 | ZHD3_ORYSJ; Zinc-finger homeodomain protein 3 | ||||
TrEMBL | A0A0E0FAJ1 | 1e-130 | A0A0E0FAJ1_9ORYZ; Uncharacterized protein | ||||
STRING | ONIVA12G05670.2 | 1e-117 | (Oryza nivara) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP815 | 35 | 145 | Representative plant | OGRP91 | 16 | 237 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G14440.2 | 3e-42 | homeobox protein 31 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g10630.1 |