PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g07790.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

NAC

Protein Properties

Length: 572aa MW: 60152.9 Da PI: 4.6271

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g07790.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	74.4	2.8e-23	30	164	1	127
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk.....kvkaeekewyfFskrdkkya....tgkrknr.atksg 81 lppG+ F+Pt ee +++yL++ ++gk++++ e+ ++ +d+y P L++ + +w+f ++r+++++ +kr++r +++ g LOC_Os12g07790.1 30 LPPGVYFNPTREEAMHHYLNRWIAGKTIPEMEAgfVAGADVYGDGPDALRRrhrpgYWCNCVYKWFFLCHRKRQSSrrttGNKRAERvVAAGG 122 79***********************777664459999******8534554222245599999988744423458888667799 PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 +Wk k+vl +g g +++L fy ++++++kt+W+m+ey+ LOC_Os12g07790.1 123 RWKVEQG-KKVLG-GGGGGGERDSLGFY--SSNSTKKTSWIMEEYT 164 6544.68888.88899******..556667*******7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.62E-22	26	191	IPR003441	NAC domain
PROSITE profile	PS51005	29.409	30	191	IPR003441	NAC domain
Pfam	PF02365	9.2E-16	31	164	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 572 aa Download sequence Send to blast
MDVDPPPPLP PPPPPPPPPA TPQQNKAVEL PPGVYFNPTR EEAMHHYLNR WIAGKTIPEM 60 EAGFVAGADV YGDGPDALRR RHRPGYWCNC VYKWFFLCHR KRQSSRRTTG NKRAERVVAA 120 GGRWKVEQGK KVLGGGGGGG ERDSLGFYSS NSTKKTSWIM EEYTSSAADG AAAARGEEDR 180 MEPVLCKIYL SPRAPAGEKR ALFGEDGVAV GPDGRKRNAR VTVLATLFDD VAALLGQPVA 240 APPLPAPGEQ LGHGHGHFDD VAARFGQVAV AALPASGDLG HGDFDDDAAA LLGQVAMAPA 300 PAPGHHQQGY VVAEAPLPES GYLGHYHHDG HLAQAAAAPE QDHYLGYHSH DAHVVDAEAT 360 PEQGYHDDAH VAVAPAPEQG DLGHDQGHLA AALTPEECGE IVGAYEFHPE MVQMLSIGFA 420 APDEQLLPQL LDPTGGGYDM ASSAIAAVGD VNAYAAAAPT PRIRPNAAEA MAATATAETM 480 PPPLDAVAAE LSAPPRGLPP ELAFSALPSV QQEPSCDDGD NFGELVAEAM PPLIGENAGV 540 DAGSDEPLPD LAGIMTELDF GHDFFSNQHR E*

Sequence ? help Back to Top

Protein Sequence Length: 572 aa Download sequence Send to blast

MDVDPPPPLP PPPPPPPPPA TPQQNKAVEL PPGVYFNPTR EEAMHHYLNR WIAGKTIPEM  60
EAGFVAGADV YGDGPDALRR RHRPGYWCNC VYKWFFLCHR KRQSSRRTTG NKRAERVVAA  120
GGRWKVEQGK KVLGGGGGGG ERDSLGFYSS NSTKKTSWIM EEYTSSAADG AAAARGEEDR  180
MEPVLCKIYL SPRAPAGEKR ALFGEDGVAV GPDGRKRNAR VTVLATLFDD VAALLGQPVA  240
APPLPAPGEQ LGHGHGHFDD VAARFGQVAV AALPASGDLG HGDFDDDAAA LLGQVAMAPA  300
PAPGHHQQGY VVAEAPLPES GYLGHYHHDG HLAQAAAAPE QDHYLGYHSH DAHVVDAEAT  360
PEQGYHDDAH VAVAPAPEQG DLGHDQGHLA AALTPEECGE IVGAYEFHPE MVQMLSIGFA  420
APDEQLLPQL LDPTGGGYDM ASSAIAAVGD VNAYAAAAPT PRIRPNAAEA MAATATAETM  480
PPPLDAVAAE LSAPPRGLPP ELAFSALPSV QQEPSCDDGD NFGELVAEAM PPLIGENAGV  540
DAGSDEPLPD LAGIMTELDF GHDFFSNQHR E*

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QWY5

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g07790.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g07790

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL732376	0.0	AL732376.2 Oryza sativa chromosome 12, . BAC OSJNBa0086B10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	Q2QWY5	0.0	Q2QWY5_ORYSJ; No apical meristem protein
STRING	ORUFI12G05310.1	0.0	(Oryza rufipogon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13570	17	24
Representative plant	OGRP14531	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	4e-12	NAC domain containing protein 63

Link Out ? help Back to Top
Phytozome	LOC_Os12g07790.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]