PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g07480.1

Common Name

LOC9271589, Os12g0173300, Os12g0173333, OSNPB_120173300

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

TCP

Protein Properties

Length: 419aa MW: 42526.3 Da PI: 6.1836

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g07480.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.6	2.2e-42	104	249	3	125
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssasnsssg 88 +k++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++tieWLlqqa+pai+++tgt++++a+++ + ++s ssasn++ + LOC_Os12g07480.1 104 LAKRPSKDRHTKVDGRGRRIRMPALCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFSslnisirSGAASASSASNPNRA 196 689*****************************************************************8876666666556666666666666 PP TCP 89 kaaksaa.kskksqksaasalnlakesr...............akarararer 125 + ++ a +++++q++ +++l ++++ a a +r+r+r LOC_Os12g07480.1 197 SPFPALAlHPHHQQHDVSAMLGYHHHLLpppqqqqespqdpggAGAFMRKRYR 249 66666666888888888888888875445666666666666555555554444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.2E-38	109	220	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.705	109	163	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0001047	Molecular Function	core promoter binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0025281	anatomy	pollen
PO:0001015	developmental stage	K second mitotic division stage
PO:0007130	developmental stage	sporophyte reproductive stage

Sequence ? help Back to Top
Protein Sequence Length: 419 aa Download sequence Send to blast
MDHGGGGGGG GAAPSSSNIG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ 60 TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG 120 RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI 180 RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA 240 GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAAMWAV APNTAAPGGA 300 FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL 360 GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNNSSQ*

Sequence ? help Back to Top

Protein Sequence Length: 419 aa Download sequence Send to blast

MDHGGGGGGG GAAPSSSNIG GGSGGGGGGG GRENHPHHPF YYSGPAAAAA AAAAAQQQQQ  60
TFMGALAITP VVAEQPQGSS GGGEKKVVAP TTPAAAGAAA TTTLAKRPSK DRHTKVDGRG  120
RRIRMPALCA ARVFQLTREL GHKSDGETIE WLLQQAEPAI IAATGTGTIP ANFSSLNISI  180
RSGAASASSA SNPNRASPFP ALALHPHHQQ HDVSAMLGYH HHLLPPPQQQ QESPQDPGGA  240
GAFMRKRYRE DLFKEDDDRQ DPSAPKAREQ QPTTPQAAAA AAAAAAMWAV APNTAAPGGA  300
FWMLPVSASS AAAARPTEQP MWSFAGGGGG AATVQAPLQF MSTRVNYPGS AGAGMSDTNL  360
GMLAALNAYN RGGAGDQQPQ QQPEMDQQGR NDDDDDDGDD SGDEDNGGAN NNNNNSSQ*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.98477	0.0	callus\| leaf

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QX18

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator. Binds the promoter core sequence 5'-GGNCC-3'. {ECO:0000269\|PubMed:12000681}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g07480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g07480

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL713933	0.0	AL713933.6 Oryza sativa chromosome 12, . BAC OJ1041_D02 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015618822.1	0.0	transcription factor PCF3-like
Swissprot	Q53PH2	4e-75	PCF3_ORYSJ; Transcription factor PCF3
TrEMBL	Q2QX18	0.0	Q2QX18_ORYSJ; Os12g0173300 protein
STRING	OS12T0173300-00	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP4934	26	52
Representative plant	OGRP4591	10	23

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	3e-44	TCP family protein

Link Out ? help Back to Top
Phytozome	LOC_Os12g07480.1
Entrez Gene	9271589

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]