PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g06380.1

Common Name

LOC4351567, Os12g0160900, OsJ_35306, OSNPB_120160900

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 818aa MW: 93406.5 Da PI: 5.0992

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g06380.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	77.1	3.4e-24	97	183	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 Y++Y++++GFsvrk k+++ + +++i +++++Cskeg +++e+ + +++ +++ trt+Cka+++ + +++g+w+v++++ eHnHel+ LOC_Os12g06380.1 97 LYCDYGHRMGFSVRKGKQYYFTGTKTIRTKDYYCSKEGLKDDEQLT--EANFNKPDTRTNCKAMVRYRVDSEGHWRVIQIVPEHNHELV 183 7***************************************9988..9999*********************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.4E-22	97	183	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.1E-26	294	388	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.557	576	612	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.1E-4	578	608	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.0E-6	587	614	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Plant Ontology ? help Back to Top
PO Term	PO Category	PO Description
PO:0009049	anatomy	inflorescence
PO:0001083	developmental stage	inflorescence development stage
PO:0007006	developmental stage	IL.00 inflorescence just visible stage

Sequence ? help Back to Top
Protein Sequence Length: 818 aa Download sequence Send to blast
MEETSIAIEI DGEAICLDSV GDNEEQGTQE NQEIQIIYDA ENEGQVAFDN GEQGKEEHPM 60 RNEEENQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT 120 KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR YRVDSEGHWR VIQIVPEHNH 180 ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHENL HMNDDGAECQ SQLGIQSYTL 240 LEPEDSEALV GYFKRRTIEQ GMFYWDVLVE DGRMTNFFWR DGRSRVDYDC FGDVVVFDTA 300 YRTSKYNMIC APFVGVNHHG QDVMLGCALL LDESLTSYEW LFKSFLDSMG GHPPKTIFTV 360 MAETISKAIE GVLPETRHCI CQWSIEKNLQ SHLGTLNVSG TFHSMLTKCM RECESEAEFE 420 ETWAMMLNEC NMQDDQWLSD LYQQRRKWST VHHRDAFDGG INSLDRSDSS NNVLSSIANE 480 STSPTQFILD FDKLVGSWRT NESAEDIQCT QTSPESRVKH RSILEHAAEV YTRKVYKSLE 540 TEYLDGCSAT SYQEMQCSET LYRFEFILQR SGPKVQVVFL DTSTMELSCT CKKFETTGIL 600 CSHAINALDL KNFDRIPERY VLKRWKKYVR KGTYLFPSDE FVGQDCTEPG LAFRNKAMRF 660 VYDLLMKSKG HQDTRKLILD VFENGEKLVE SLCELKRLNA HASGREKDGS KVEKRKKKSA 720 KQEKSSRNVK QAVSSQTADT VLVDPPNQNQ YFATEDMATN SSIGRPFFYQ GFPSAGVSTS 780 QIQGHTNIHS VPQCAPQEYS AYGAAHPPPT FGGGRNF*

Sequence ? help Back to Top

Protein Sequence Length: 818 aa Download sequence Send to blast

MEETSIAIEI DGEAICLDSV GDNEEQGTQE NQEIQIIYDA ENEGQVAFDN GEQGKEEHPM  60
RNEEENQENI PVIPSREELT EELRNKIANS EEEAYRLYCD YGHRMGFSVR KGKQYYFTGT  120
KTIRTKDYYC SKEGLKDDEQ LTEANFNKPD TRTNCKAMVR YRVDSEGHWR VIQIVPEHNH  180
ELVRPEEVHL LRSVRTLSIP KPGVLNAMVN AEIQAMHENL HMNDDGAECQ SQLGIQSYTL  240
LEPEDSEALV GYFKRRTIEQ GMFYWDVLVE DGRMTNFFWR DGRSRVDYDC FGDVVVFDTA  300
YRTSKYNMIC APFVGVNHHG QDVMLGCALL LDESLTSYEW LFKSFLDSMG GHPPKTIFTV  360
MAETISKAIE GVLPETRHCI CQWSIEKNLQ SHLGTLNVSG TFHSMLTKCM RECESEAEFE  420
ETWAMMLNEC NMQDDQWLSD LYQQRRKWST VHHRDAFDGG INSLDRSDSS NNVLSSIANE  480
STSPTQFILD FDKLVGSWRT NESAEDIQCT QTSPESRVKH RSILEHAAEV YTRKVYKSLE  540
TEYLDGCSAT SYQEMQCSET LYRFEFILQR SGPKVQVVFL DTSTMELSCT CKKFETTGIL  600
CSHAINALDL KNFDRIPERY VLKRWKKYVR KGTYLFPSDE FVGQDCTEPG LAFRNKAMRF  660
VYDLLMKSKG HQDTRKLILD VFENGEKLVE SLCELKRLNA HASGREKDGS KVEKRKKKSA  720
KQEKSSRNVK QAVSSQTADT VLVDPPNQNQ YFATEDMATN SSIGRPFFYQ GFPSAGVSTS  780
QIQGHTNIHS VPQCAPQEYS AYGAAHPPPT FGGGRNF*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Os.24302	0.0	callus\| flower\| leaf\| panicle\| root\| seed\| stem

Expression -- Microarray ? help Back to Top
Source	ID	E-value
GEO	32975856	0.0
Expression Atlas	Q2QXD6	-

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g06380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g06380

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK065838	0.0	AK065838.1 Oryza sativa Japonica Group cDNA clone:J013039J03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015620809.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	B8BNA6	0.0	B8BNA6_ORYSI; Uncharacterized protein
TrEMBL	Q2QXD6	0.0	Q2QXD6_ORYSJ; Os12g0160900 protein
STRING	OS12T0160900-01	0.0	(Oryza sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP14767	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	2e-85	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os12g06380.1
Entrez Gene	4351567

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]