PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | LOC_Os12g06080.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 278aa MW: 31078.6 Da PI: 7.7821 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 96 | 2.5e-30 | 36 | 129 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k ltpsdv+k++rlv+pk++ae++ g + e++ l++edesg+ W+++++y+ +s++yvltkGW+++vk+++L++gD+v F++++ LOC_Os12g06080.1 36 FEKPLTPSDVGKLNRLVIPKQHAERYfplggGDSGEKGLLLSFEDESGKPWRFRYSYWTSSQSYVLTKGWSRYVKEKRLDAGDVVHFERVRGl 128 99****************************9555568889************************************************87654 PP S CS B3 88 s 88 LOC_Os12g06080.1 129 G 129 3 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 6.8E-41 | 31 | 145 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.19E-30 | 33 | 127 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-28 | 35 | 127 | No hit | No description |
PROSITE profile | PS50863 | 13.634 | 36 | 142 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-22 | 36 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.7E-27 | 36 | 140 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010358 | Biological Process | leaf shaping | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 278 aa Download sequence Send to blast |
MAMHPLAQGH PQAWPWGVAM YTNLHYHHHY EREHLFEKPL TPSDVGKLNR LVIPKQHAER 60 YFPLGGGDSG EKGLLLSFED ESGKPWRFRY SYWTSSQSYV LTKGWSRYVK EKRLDAGDVV 120 HFERVRGLGA ADRLFIGCRR RGESAPAPPP AVRVTPQPPA LNGGEQQPWS PMCYSTSGSS 180 YDPTSPANSY AYHRSVDQDH SDILHAGESQ READAKSSSA ASAPPPSRRL RLFGVNLDCG 240 PEPEADQATA MYGYMHHQSP YAAVSTVPNY WSVFFQF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 9e-51 | 31 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
5os9_B | 9e-51 | 31 | 141 | 3 | 113 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Os.5875 | 0.0 | panicle| root |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 32995802 | 0.0 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | LOC_Os12g06080.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
RiceGE | Os12g06080 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015618154.1 | 0.0 | B3 domain-containing protein Os11g0156000-like | ||||
Swissprot | Q53QI0 | 1e-134 | Y1160_ORYSJ; B3 domain-containing protein Os11g0156000 | ||||
TrEMBL | A0A0E0RE10 | 0.0 | A0A0E0RE10_ORYRU; Uncharacterized protein | ||||
STRING | ORUFI12G03970.1 | 0.0 | (Oryza rufipogon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2446 | 38 | 89 | Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06250.2 | 9e-53 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | LOC_Os12g06080.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|