PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g05990.1 | ||||||||
Common Name | LOC4351545, Os12g0156100, OSNPB_120156100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | NAC | ||||||||
Protein Properties | Length: 308aa MW: 32505.3 Da PI: 7.1786 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 130 | 1.8e-40 | 19 | 154 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 +pGfrF Pt+eel+ +yL+++++g++ ++++vi+ vd+y ++P++L + ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+ LOC_Os12g05990.1 19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSP 111 69**********************995666778**************8445544444666********************************* PP NAM 90 kevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s+ +++g+k+t+vfy+grap+g+kt+W m+ey++ LOC_Os12g05990.1 112 SFVFSSsaaaAARVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154 ****9877666667***************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-43 | 16 | 198 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.209 | 18 | 200 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-22 | 20 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Plant Ontology ? help Back to Top | ||||||
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PO Term | PO Category | PO Description | ||||
PO:0009071 | anatomy | anther wall tapetum | ||||
PO:0001009 | developmental stage | D pollen mother cell meiosis stage | ||||
PO:0007130 | developmental stage | sporophyte reproductive stage |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY 60 HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSAA 120 AAARVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAA DDDHNAAGVA VQLPPMAPPP 180 SSSACVRLRN ELSVCRVYVS TGTLRSFDRR PLDAPPVISH HQPQLQQQQR QLPSSAAAAA 240 TNGNLIALAG GYECSHDSSG GSSEDAAIDW SSLITAATDS ATAAVDFSFN DDIDFSPAAV 300 GPWAPQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-28 | 20 | 155 | 19 | 143 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_B | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_C | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swm_D | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_A | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_B | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_C | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
3swp_D | 7e-28 | 20 | 155 | 22 | 146 | NAC domain-containing protein 19 |
4dul_A | 6e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
4dul_B | 6e-28 | 20 | 155 | 19 | 143 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.19369 | 0.0 | callus| leaf| panicle |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32994743 | 0.0 | ||||
Expression Atlas | Q2QXH9 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g05990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g05990 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL928758 | 0.0 | AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AL954632 | 0.0 | AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012620 | 0.0 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. | |||
GenBank | KP033190 | 0.0 | KP033190.1 Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619441.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 1e-66 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A0C5D1U4 | 0.0 | A0A0C5D1U4_ORYSA; Oryza sativa cultivar Dong Jin NAC-related protein 134 mRNA | ||||
TrEMBL | A2ZI84 | 0.0 | A2ZI84_ORYSI; Uncharacterized protein | ||||
TrEMBL | Q2QXH9 | 0.0 | Q2QXH9_ORYSJ; No apical meristem protein, expressed | ||||
STRING | OS12T0156100-01 | 0.0 | (Oryza sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1005 | 38 | 140 | Representative plant | OGRP2278 | 11 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-62 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g05990.1 |
Entrez Gene | 4351545 |
Publications ? help Back to Top | |||
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