PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g05940.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 588aa MW: 68187.9 Da PI: 6.7644

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g05940.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	78.7	1.1e-24	11	100	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+ +Y+ ++GF+vrk++++k++ ++++t+++fvCsk+g+r ++k++ + ++++raetr+gC+ ++ +++++ ++k+e+++le HnH l+ LOC_Os12g05940.1 11 NFWVTYGGRMGFDVRKKYHNKNQVTQKTTSARFVCSKQGFRGKDKRD-NLTKHPRAETRIGCNVRMGLTLNRvNEKYEISDLEVMHNHILQ 100 69****************************************999.99************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	3.5E-18	11	100	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.1E-26	220	314	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 588 aa Download sequence Send to blast
MAFSDTEEAW NFWVTYGGRM GFDVRKKYHN KNQVTQKTTS ARFVCSKQGF RGKDKRDNLT 60 KHPRAETRIG CNVRMGLTLN RVNEKYEISD LEVMHNHILQ TPETSHLMPS QRKITEVQAF 120 EIEMADDTSI QPRIAHELAA RHVGGSSNLG YTCLDQQNYL RTKRQKELKY GEAGSLLNYF 180 KNKAIDNPSF HYAVKLDSEE QITNIFWAEM IIDYAHFGDV VTFDTTFGTN KESWPFGVFV 240 GFNHFRETVV FGAALMYDET CDSFCWLFDA FLSCHNHKHP QTIYTDQDVA MGKAITEVFT 300 ETRHGLCTFH IMQNANKHIN RQKTSDGSNV LADFSACMCE HEDVEKFEEV FADMRTKVRK 360 GTWLDSVYKL KEKWAECFMK NAYTLGMRST QLSEGLNSDL KEYLNCELNI VRFFHHFDRV 420 VQGKRDKEIK SEYESRKKLP RILMRIPMLL QTNFEECFAF VDNALETLGQ QVEQMVEVNT 480 NIQSNLETEF EIPENVSQAI GLKKKETRCS TSKRKKNWVD KLHKKRKKSL RYAKNGNEVA 540 HPEPLEEDIL ENSTKESHQD FEFLGSYTQL LAGDSDGYEL YSEGFHQ*

Sequence ? help Back to Top

Protein Sequence Length: 588 aa Download sequence Send to blast

MAFSDTEEAW NFWVTYGGRM GFDVRKKYHN KNQVTQKTTS ARFVCSKQGF RGKDKRDNLT  60
KHPRAETRIG CNVRMGLTLN RVNEKYEISD LEVMHNHILQ TPETSHLMPS QRKITEVQAF  120
EIEMADDTSI QPRIAHELAA RHVGGSSNLG YTCLDQQNYL RTKRQKELKY GEAGSLLNYF  180
KNKAIDNPSF HYAVKLDSEE QITNIFWAEM IIDYAHFGDV VTFDTTFGTN KESWPFGVFV  240
GFNHFRETVV FGAALMYDET CDSFCWLFDA FLSCHNHKHP QTIYTDQDVA MGKAITEVFT  300
ETRHGLCTFH IMQNANKHIN RQKTSDGSNV LADFSACMCE HEDVEKFEEV FADMRTKVRK  360
GTWLDSVYKL KEKWAECFMK NAYTLGMRST QLSEGLNSDL KEYLNCELNI VRFFHHFDRV  420
VQGKRDKEIK SEYESRKKLP RILMRIPMLL QTNFEECFAF VDNALETLGQ QVEQMVEVNT  480
NIQSNLETEF EIPENVSQAI GLKKKETRCS TSKRKKNWVD KLHKKRKKSL RYAKNGNEVA  540
HPEPLEEDIL ENSTKESHQD FEFLGSYTQL LAGDSDGYEL YSEGFHQ*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	513	527	RKKNWVDKLHKKRKK
2	523	527	KKRKK

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QXI4

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g05940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g05940

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL928758	0.0	AL928758.3 Oryza sativa chromosome 12, . BAC OSJNBb0075N21 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AL954632	0.0	AL954632.3 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619144.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q2QXI4	0.0	Q2QXI4_ORYSJ; Transposon protein, putative, unclassified
STRING	Traes_2AS_BB6B8AC48.2	0.0	(Triticum aestivum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-78	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os12g05940.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]