PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g05680.1
Common NameLOC4351527, Os12g0152900, OsJ_35251, OSNPB_120152900
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family bZIP
Protein Properties Length: 490aa    MW: 52859.2 Da    PI: 7.3453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g05680.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.77.9e-11185211733
                       HHCHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   7 errkqkNReAArrsRqRKkaeieeLee 33 
                        rr+++NReAAr+sR+RKka+i++Le 
  LOC_Os12g05680.1 185 MRRLAQNREAARKSRLRKKAYIQQLES 211
                       69***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.8E-7177225No hitNo description
SMARTSM003381.8E-5178254IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.128181225IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-6183219No hitNo description
PfamPF001701.4E-7184212IPR004827Basic-leucine zipper domain
PROSITE patternPS000360186201IPR004827Basic-leucine zipper domain
PfamPF141445.0E-29263337IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009066anatomyanther
PO:0001004developmental stageanther development stage
PO:0007130developmental stagesporophyte reproductive stage
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MGEARRGQNP HHVLGYGFHG TTLPNSMASA NLFEQGGGGG GGAAYFGELE EALVHQVATL  60
RRRAQQTATT TTSHHGHTTP FSTAAAAATA TATARPPATL DIFPSWPMRR SSLPTPKDGC  120
SNVTADTTDS ESSSKNNGDQ GAAAADMASQ FDQIPQQQQK QHKKMAASST HSDHRMTKTL  180
DPKIMRRLAQ NREAARKSRL RKKAYIQQLE SSKLRLAQME QDLERARSQG LLLGGSPGGN  240
TSAGAAMFDA EYGRWLEDGG RRMAELHGGL HAHLPDGDLR AIVDDALAHY DELFRLRAAA  300
AKADVFHLIT GTWATPAERC FLWMGGFQPS DLLKTVAPQL DPLTEQQVVG ICSLQQSSQQ  360
AEEALSQGLE QLHQSLAETV ANGGSVVNEA SLGSFMGYMA LALGKLSNLE GFVIQADNLR  420
QQTLHQMHRI LTIRQAARCF LAIGEYHNRL RALSSLWASR PREILVADEG NCGELSIAAQ  480
PSESQFSAF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.540580.0callus| leaf| root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO329868290.0
Expression AtlasQ2QXL0-
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g05680.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g05680
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1016200.0AK101620.1 Oryza sativa Japonica Group cDNA clone:J033052J02, full insert sequence.
GenBankFJ7509290.0FJ750929.1 Oryza sativa clone KCS115G01 DNA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619722.10.0transcription factor TGAL11
SwissprotQ2QXL00.0TGL11_ORYSJ; Transcription factor TGAL11
TrEMBLA0A0E0RDX10.0A0A0E0RDX1_ORYRU; Uncharacterized protein
TrEMBLA0A0E0RDX20.0A0A0E0RDX2_ORYRU; Uncharacterized protein
TrEMBLB8BN880.0B8BN88_ORYSI; Uncharacterized protein
STRINGORUFI12G03660.10.0(Oryza rufipogon)
STRINGOS12T0152900-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44443670
Representative plantOGRP64961119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08320.21e-128bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]
  3. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]