PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | LOC_Os12g04370.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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Family | GRAS | ||||||||
Protein Properties | Length: 978aa MW: 108691 Da PI: 7.018 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 34.4 | 2.9e-11 | 20 | 127 | 2 | 110 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykal.ppsetseknsseelaalklfsevsPilkf 93 v lL ecA +v++g++e+a+ ++++ l ++ p+q l + ++ L +rl++s ++ly al +ps+ ++s+ + f+++ P+l LOC_Os12g04370.1 20 VPLLHECASHVTEGSFEKADFSFKKIRMLT-IADGPLQHLSKIIVDSLDHRLLSSIQGLYGALiNPSDYF-EKSTLPGCPAHNFFKLNPYLST 110 6789**********************9876.5667**************************995666655.4555555555789********* PP GRAS 94 shltaNqaIleavegee 110 +++t N+aI+ea+e e+ LOC_Os12g04370.1 111 GFVTINRAIMEAMEDEK 127 **************986 PP | |||||||
2 | GRAS | 205.8 | 2.4e-63 | 169 | 476 | 109 | 371 |
GRAS 109 eervHiiDfdis..qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp. 198 + vHi+D++ s ++ QW+ Ll+ + Rp+g+p+l +T++++ +++ l e+++ L+k Ae+l+v+f+f v rle+l++++Lr LOC_Os12g04370.1 169 LQVVHIVDLSCSaaHPWQWLKLLDDFHGRPGGAPELYLTVLHD----DNDFLAEMQSLLSKKAESLEVSFRFIS-VIGRLETLDFSNLRSTFq 256 4789*****8653389***************************....9**************************.799**********54444 PP GRAS 199 ...gEalaVnlvlqlhrll.........................................desvsleserdevLklvkslsPkvvvvveqead 247 g a+a++++lq+hrll s +++ ++L++++ l+P+++v++eq+ad LOC_Os12g04370.1 257 ikfGVAVAISCALQMHRLLlvddnlsstsiaqlqkmanftqpkqmassvcspastlnylqTPSPRTPKLLARLLSAIRALKPNIMVIMEQDAD 349 555*******************************************************98666777778899********************* PP GRAS 248 hnsesFlerflealeyysalfdsleaklpres...eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqa 337 hn+ F +rf e l+yy+alfd+++a ++++ +er vEr++l++ei+n++ ceg +r erhe+l +W + +ee+GF++v+ls +a + LOC_Os12g04370.1 350 HNALLFRDRFNEVLNYYAALFDCFHAVAAANPgrtDERLRVERMILREEIKNILVCEGVHRHERHERLDQWAMHMEESGFHNVQLSFSAIREG 442 ************************77654444456********************************************************** PP GRAS 338 klllrkvksdgyrveeesgslvlgWkdrpLvsvS 371 k l ++ + + +e++g+l+l W + +L+s+S LOC_Os12g04370.1 443 KENLLSFGLKNCQNKEDRGCLLLSWGSTNLYSIS 476 ********888*********************99 PP | |||||||
3 | GRAS | 356.2 | 4.9e-109 | 529 | 966 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 + lL++cA vs+g++ +a+ +L+++ +las d+ ++qRlaa+f+ ALa++l++ ++l++al +s++s + + a++ ++v P+lk+ LOC_Os12g04370.1 529 IGLLYQCAAEVSAGSFDRANLCLEHITQLASLDApHALQRLAAVFADALARKLLNLIPGLSRALLSSANSADA-HLVPVARRHMFDVLPFLKL 620 679*******************************9*****************************888887544.44446778899******** PP GRAS 94 shltaNqaIleavegeervHiiDfd..isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvak 184 ++lt+N+aIlea+ege+ vH++Df+ + +++QW+aL++a+ R+egpp+lRiT+v++ ske l +++ L+k Ae++++ f+fn+ v+ LOC_Os12g04370.1 621 AYLTTNHAILEAMEGERFVHVVDFSgpAANPVQWIALFHAFRGRREGPPHLRITAVHD----SKEFLANMAAVLSKEAEAFDIAFQFNA-VEA 708 ************************966899****************************....9**************************.799 PP GRAS 185 rledleleeL....rvkpgEalaVnlvlqlhrll........................................................... 214 +l+++++++L v++gEalaV++vlqlhrll LOC_Os12g04370.1 709 KLDEMDFDALrhdlGVRSGEALAVSVVLQLHRLLavddgrrhaatgcltpvqiiarssprsfgellerelntrlqlspdasvvsslsphspaa 801 9**999998843335667*************************************************************************** PP GRAS 215 ...desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegae 304 +++++++ + ++L++v+slsPk++v++eqea+hn++ F erf eal+yy++lfd+l+ + ++++ er+ vEr+llg+ei+ vvacegae LOC_Os12g04370.1 802 ataAHPTTSTPKLGSFLSAVRSLSPKIMVMTEQEANHNGGAFQERFDEALNYYASLFDCLQRS-AAAAAERARVERVLLGEEIRGVVACEGAE 893 *98555555556999*********************************************999.68889************************ PP GRAS 305 rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdg.yrveee..sgslvlgWkdrpLvsvSaWr 374 r+erhe++++W +r+e+aG+++v ls++ a++a+ ll+ +++ g y+v ++ + ++++W++rpL++v+aWr LOC_Os12g04370.1 894 RTERHERARQWAARMEAAGMESVGLSYSGAMEARKLLQSCGWVGpYEVRHDagGHGFFFCWHKRPLYAVTAWR 966 *****************************************6666****884345678**************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 32.624 | 1 | 459 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.0E-8 | 20 | 127 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.3E-61 | 169 | 476 | IPR005202 | Transcription factor GRAS |
PROSITE profile | PS50985 | 50.353 | 502 | 943 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.7E-106 | 529 | 966 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 978 aa Download sequence Send to blast |
MMHGLWVQDQ GMVDHLAQLV PLLHECASHV TEGSFEKADF SFKKIRMLTI ADGPLQHLSK 60 IIVDSLDHRL LSSIQGLYGA LINPSDYFEK STLPGCPAHN FFKLNPYLST GFVTINRAIM 120 EAMEDEKNFL EIKVKSNLCS ILKLSHYNFK TLQGAIYVER SLMFNMVELQ VVHIVDLSCS 180 AAHPWQWLKL LDDFHGRPGG APELYLTVLH DDNDFLAEMQ SLLSKKAESL EVSFRFISVI 240 GRLETLDFSN LRSTFQIKFG VAVAISCALQ MHRLLLVDDN LSSTSIAQLQ KMANFTQPKQ 300 MASSVCSPAS TLNYLQTPSP RTPKLLARLL SAIRALKPNI MVIMEQDADH NALLFRDRFN 360 EVLNYYAALF DCFHAVAAAN PGRTDERLRV ERMILREEIK NILVCEGVHR HERHERLDQW 420 AMHMEESGFH NVQLSFSAIR EGKENLLSFG LKNCQNKEDR GCLLLSWGST NLYSISLRLC 480 CTDRGMFQDD MLSSATSSPA SSVYSPSPSP SNGSWVQELS HDQQSVRLIG LLYQCAAEVS 540 AGSFDRANLC LEHITQLASL DAPHALQRLA AVFADALARK LLNLIPGLSR ALLSSANSAD 600 AHLVPVARRH MFDVLPFLKL AYLTTNHAIL EAMEGERFVH VVDFSGPAAN PVQWIALFHA 660 FRGRREGPPH LRITAVHDSK EFLANMAAVL SKEAEAFDIA FQFNAVEAKL DEMDFDALRH 720 DLGVRSGEAL AVSVVLQLHR LLAVDDGRRH AATGCLTPVQ IIARSSPRSF GELLERELNT 780 RLQLSPDASV VSSLSPHSPA AATAAHPTTS TPKLGSFLSA VRSLSPKIMV MTEQEANHNG 840 GAFQERFDEA LNYYASLFDC LQRSAAAAAE RARVERVLLG EEIRGVVACE GAERTERHER 900 ARQWAARMEA AGMESVGLSY SGAMEARKLL QSCGWVGPYE VRHDAGGHGF FFCWHKRPLY 960 AVTAWRPAAS RRGHTRS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-29 | 558 | 966 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Os.57564 | 0.0 | callus| root |
Expression -- Microarray ? help Back to Top | ||||||
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Source | ID | E-value | ||||
GEO | 32990446 | 0.0 | ||||
Expression Atlas | Q2QXZ6 | - |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | LOC_Os12g04370.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
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Source | ID | |||||
RiceGE | Os12g04370 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AL935154 | 0.0 | AL935154.2 Oryza sativa chromosome 12, . BAC OSJNBb0109O08 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | AP014968 | 0.0 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015619625.1 | 0.0 | scarecrow-like protein 3 | ||||
TrEMBL | Q2QXZ6 | 0.0 | Q2QXZ6_ORYSJ; GRAS family transcription factor containing protein | ||||
STRING | ORGLA12G0021500.1 | 0.0 | (Oryza glaberrima) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP604 | 38 | 176 | Representative plant | OGRP2564 | 14 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50420.1 | 1e-100 | scarecrow-like 3 |
Link Out ? help Back to Top | |
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Phytozome | LOC_Os12g04370.1 |
Publications ? help Back to Top | |||
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