PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g04230.1
Common NameOs12g0137000, OSNPB_120137000
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family NAC
Protein Properties Length: 366aa    MW: 39587.4 Da    PI: 4.3027
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g04230.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM58.52.3e-18171432126
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkklel.eevikevdiykvePwdLpk...kvkaeekewyfFskrdkkyatgk.....rknr.atksgyWk 84 
                       p G+ F P+ e+l+ +yL++ ++g+++e+  ++++e+d+y ++P +L +   ++ ++ k+wyf + ++ k  +g      r nr +   g+W+
  LOC_Os12g04230.1  17 PSGYFFVPKPEQLIRDYLNHWITGRPIEElRDIVREADVYGSDPATLTEahrAYGHDGKSWYFLTVAKWKGGRGGagtagRLNRcVEGGGTWH 109
                       89************************87725569999**********8434344457789****999999884434445599**666699*** PP

               NAM  85 atgkdkevlskkgelvglkktLvfykgrapkgektdWvmhey 126
                       ++ + + +        g ++ + +   rap  +kt+W+m+e 
  LOC_Os12g04230.1 110 NSQRRRVIEG-----YGDRQAFEY---RAPGNKKTNWLMEEI 143
                       9988666654.....899999998...599999*******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-2114165IPR003441NAC domain
PROSITE profilePS5100521.90116165IPR003441NAC domain
PfamPF023651.2E-1017142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
MAEEDDKKQK GPDVTVPSGY FFVPKPEQLI RDYLNHWITG RPIEELRDIV READVYGSDP  60
ATLTEAHRAY GHDGKSWYFL TVAKWKGGRG GAGTAGRLNR CVEGGGTWHN SQRRRVIEGY  120
GDRQAFEYRA PGNKKTNWLM EEIASNLPAA ITDEGIMVIC KVYLSPRAKE ATADEEERQE  180
TNVVPGPKRL REAEATGYDA PAPETPQPDV GCSYSGGGET SQATASMDYC CSTTTHTADD  240
TANAAAYYYG DVDAIKPDAY DGGDYGIGIN ADGELVLCGN GHGGIGTQGQ MPLAMQNTNG  300
EMTLFSPMNG YGVGFNEEVR QEPQVGGEVE MNDFFNDLFV DFDGAGDPNP NPNEGGDSHG  360
HILCE*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasQ2QY11
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g04230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g04230
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149680.0AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005020.0BX000502.2 Oryza sativa chromosome 12, . BAC OSJNBb0041E01 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006664975.15e-74PREDICTED: NAC domain-containing protein 76-like, partial
TrEMBLQ2QY110.0Q2QY11_ORYSJ; Os12g0137000 protein
STRINGOS12T0137000-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114741834
Representative plantOGRP1706023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10500.12e-10NAC domain containing protein 53
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]