PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

LOC_Os12g03660.1

Organism

Oryza sativa subsp. japonica

Taxonomic ID

39947

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa

Family

FAR1

Protein Properties

Length: 774aa MW: 89683.1 Da PI: 8.0952

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
LOC_Os12g03660.1	genome	MSU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.2	5.7e-23	36	125	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +f+ +Y+ ++GF+vr+++++ks+ ++ +t+++fvCs++g+r+eekk + ++r+ra+trtgC+ ++ +++ + + +++v++l eHnH l+ LOC_Os12g03660.1 36 DFWVKYGGRIGFDVRNNYTNKSDLDQLVTSSRFVCSNQGSRAEEKKY-VVAKRNRAHTRTGCQVRMGITLLReTMTYKVHDLAVEHNHLLQ 125 69******************************************9.999**************98889************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	4.8E-16	36	125	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.1E-27	247	341	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.829	528	564	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.8E-5	539	566	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	7.5E-6	540	562	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 774 aa Download sequence Send to blast
MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR NNYTNKSDLD 60 QLVTSSRFVC SNQGSRAEEK KYVVAKRNRA HTRTGCQVRM GITLLRETMT YKVHDLAVEH 120 NHLLQTPQTS HLMPSQRNIS KHQAVEIEVA YDSGITPKAA HEFLGRHVGG SANLGYTQRD 180 HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD 240 YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWLFNTFLS 300 AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NEVKHLSPQQ TEGSSILADF 360 SACMYEYEEK EEFEDVFDAM RQKVRKVTWL DSIYNLKEKW AECYMSDVFT IGMRSPQLSE 420 SLNSNLKGHL KSDLDIGRFL NRVERVVEEK REKELQSEYE SRKKLPRIMM MTPMLVQASK 480 LYTPALFEVF QAEYEKSMAT YTKGSNGSND FIIAIGSLDD QFILEDEHKV TANPFDQTVS 540 CSCRMFERIG LLCRHALKAL DLVNIKLLPE KYVLKRWTRE AKCGAIQDMH GRQIVEDPKL 600 STTLRYRYLY QQFLPLASRA VDFEECYLLV EEALHAVSKK VEDKIKQTYS DGIAKSNDQS 660 TSQLAQNLAH VSGLKKKESR KRVTKRKTNW IDKLQKTKKR KPEEKAEEEN LQTDVEEHQE 720 CEAISSYAQL LLQRIRLKLL CQSGLMLQKY VTIRYTQELT AQVTMFRRVR THS*

Sequence ? help Back to Top

Protein Sequence Length: 774 aa Download sequence Send to blast

MTVEKAMEQN LERSTKPPCW MPQIGMTFNS YEEAWDFWVK YGGRIGFDVR NNYTNKSDLD  60
QLVTSSRFVC SNQGSRAEEK KYVVAKRNRA HTRTGCQVRM GITLLRETMT YKVHDLAVEH  120
NHLLQTPQTS HLMPSQRNIS KHQAVEIEVA YDSGITPKAA HEFLGRHVGG SANLGYTQRD  180
HKNYLRSRRQ RDLLYGEAGS LLKYFQDKIV ENPSFHYAVQ LDCEEQIANI FWADARMIAD  240
YAHFGDVITF DTTFGTNKES RPFGMFVGFN HFRETVVFGA ALMYDETFES FKWLFNTFLS  300
AHNQKQPQTI FTDQDIAMGK AVSEVFTGAW HGLCTWHISQ NEVKHLSPQQ TEGSSILADF  360
SACMYEYEEK EEFEDVFDAM RQKVRKVTWL DSIYNLKEKW AECYMSDVFT IGMRSPQLSE  420
SLNSNLKGHL KSDLDIGRFL NRVERVVEEK REKELQSEYE SRKKLPRIMM MTPMLVQASK  480
LYTPALFEVF QAEYEKSMAT YTKGSNGSND FIIAIGSLDD QFILEDEHKV TANPFDQTVS  540
CSCRMFERIG LLCRHALKAL DLVNIKLLPE KYVLKRWTRE AKCGAIQDMH GRQIVEDPKL  600
STTLRYRYLY QQFLPLASRA VDFEECYLLV EEALHAVSKK VEDKIKQTYS DGIAKSNDQS  660
TSQLAQNLAH VSGLKKKESR KRVTKRKTNW IDKLQKTKKR KPEEKAEEEN LQTDVEEHQE  720
CEAISSYAQL LLQRIRLKLL CQSGLMLQKY VTIRYTQELT AQVTMFRRVR THS*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	684	698	KRKTNWIDKLQKTKK
2	684	700	KRKTNWIDKLQKTKKRK

Expression -- Microarray ? help Back to Top
Source	ID
Expression Atlas	Q2QY69

Cis-element ? help Back to Top
Source	Link
PlantRegMap	LOC_Os12g03660.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Phenotype -- Mutation ? help Back to Top
Source	ID
RiceGE	Os12g03660

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP014968	0.0	AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBank	BX000498	0.0	BX000498.1 Oryza sativa chromosome 12, . BAC OSJNBa0009F13 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015619119.1	0.0	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	Q2QY69	0.0	Q2QY69_ORYSJ; Transposon protein, putative, unclassified
STRING	Sb03g010890.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-101	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	LOC_Os12g03660.1

Publications ? help Back to Top
Rice Chromosomes 11 and 12 Sequencing Consortia The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications. BMC Biol., 2005. 3: p. 20 [PMID:16188032]