PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g03554.1
Common NameOs12g0129550, OsJ_033746
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family C3H
Protein Properties Length: 528aa    MW: 60054.4 Da    PI: 6.8106
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g03554.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.8e-06219240627
                       -SGGGGTS--TTTTT-SS-SSS CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                       Cr+++++G+Ck+   Ck++H++
  LOC_Os12g03554.1 219 CRYYMKFGECKHMTFCKYNHPK 240
                       ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.319213241IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MEKYLEDELP GDRVECLRQV EFEKDCWGET GMQLPCRLNK PVKPSVLDAQ SLGVSLIAFR  60
TLSSVKHTSR LCMTGRLGLK KGCLLVEEVG VCIPLFEPGD QVGQLRSTQT TSKRKAASRK  120
GQREQRVNAR LQEERRKDMA FAESIWTFMP GKKGSVVQGP NTRTLTNAHD GILDDINCAQ  180
IAGKHVGDHS NCANVIKAGV ISLLGKLVQY PERPGEPFCR YYMKFGECKH MTFCKYNHPK  240
DRFSCKTTNT IRSESLCLHD QQTTILENQF GLPSLVDKAT ANTTNLVASA SSSMTPDEIG  300
EGKNNPDEVF VCICGEKLLF HTNFNTTAVK ELVVFALQRR NIKYCDIYVT WLIPMEYERM  360
DELIDRAVRD NNNDLFYYVN LPPELINPYK DTWVTFLSDF SRYIIHQLLQ YLNDTFGDPP  420
SWIADISWVP DMWKTYNYSP NNNSTLWTPR YTLDLNSCSH FARNFLNHFG REVSLQAAEA  480
AVSQNLEFLL PTIMMLMPVY SGPHHWNNDF MEILLNTNSD RSNGQIS*
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasA3CEM4
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g03554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g03554
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149681e-104AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence.
GenBankBX0005071e-104BX000507.2 Oryza sativa chromosome 12, . BAC OJ1003_C01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015619118.11e-161putative zinc finger CCCH domain-containing protein 64
SwissprotA3CEM40.0C3H64_ORYSJ; Putative zinc finger CCCH domain-containing protein 64
TrEMBLA0A0E0RDA10.0A0A0E0RDA1_ORYRU; Uncharacterized protein
STRINGOS12T0129550-000.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2038288
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16540.28e-10zinc finger nuclease 3
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]