PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LOC_Os12g02450.1
Common NameLOC4351328, Os12g0116700, OsJ_20513, OSNPB_120116700
Organism
Oryza sativa subsp. japonica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Family WRKY
Protein Properties Length: 322aa    MW: 35749.5 Da    PI: 6.3705
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LOC_Os12g02450.1genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY56.27.1e-18147201356
                       -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
              WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                       Dg++WrKYGqK++++s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  LOC_Os12g02450.1 147 DGHQWRKYGQKHINNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 201
                       9**************************99999********987.33322.2344433 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.4E-21140215IPR003657WRKY domain
SuperFamilySSF1182906.28E-18141215IPR003657WRKY domain
SMARTSM007741.1E-28145217IPR003657WRKY domain
PROSITE profilePS5081114.584147187IPR003657WRKY domain
PfamPF031062.3E-22147215IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0009005anatomyroot
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MKNSSNKRPL VADQWHPSSV CCDHRAALRE IARGQSLVTQ LRAIVLPALH SDERGDLAAQ  60
MLEGILDCSR KAISELQLQL SSDSPHDDDG HLDDKRRVRK IVSSSSDDDD HSSSKAAEDH  120
NAKPLRQHKR RRFGDSVSLE TPVPHYDGHQ WRKYGQKHIN NSKHPRSYYR CTYRQEEKCK  180
ATKTVQQRED LHHANSYNGD HPVMYTVVYY GQHTCCKGPA ASADDHVVVE ASQISTDSHC  240
QSPGSSSSEL QAAAHAGDSS QCSNISVTCS SSVVVEDCNK LLDMLPAADE LTTDVLLFDM  300
TAYAPLDLDI NWEMDTNALW A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A6e-141472151068OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Os.861510.0root| stem
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO1567657900.0
Expression AtlasQ2QYJ6-
Cis-element ? help Back to Top
SourceLink
PlantRegMapLOC_Os12g02450.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
RiceGEOs12g02450
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ2981830.0DQ298183.1 Oryza sativa WRKY transcription factor 64 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015620021.10.0probable WRKY transcription factor 70
TrEMBLQ20DP70.0Q20DP7_ORYSA; WRKY transcription factor 64
TrEMBLQ2QYJ60.0Q2QYJ6_ORYSJ; Os12g0116700 protein
STRINGOS12T0116700-010.0(Oryza sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32583079
Representative plantOGRP1147447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Rice Chromosomes 11 and 12 Sequencing Consortia
    The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications.
    BMC Biol., 2005. 3: p. 20
    [PMID:16188032]